Analysis of interatomic Contacts of Structural Units in PDB entry:
8X1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X1I entry

There is 1 chain in PDB entry 8X1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1PRO 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8X1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
44 48Right-handed 310
Helix 2
AA2
B
55 59Right-handed 310
Helix 3
AA3
B
80 85Right-handed alpha
Helix 4
AA4
B
102 117Right-handed alpha
Helix 5
AA5
B
131 135Right-handed 310
Helix 6
AA6
B
138 146Right-handed alpha
Helix 7
AA7
B
156 160Right-handed 310
Helix 8
AA8
B
177 186Right-handed alpha
Helix 9
AA9
B
194 198Right-handed 310
Helix 10
AB1
B
224 226Right-handed 310
Helix 11
AB2
B
234 249Right-handed alpha
Helix 12
AB3
B
260 272Right-handed alpha
Helix 13
AB4
B
284 308Right-handed alpha
Helix 14
AB5
B
309 312Right-handed 310
Helix 15
AB6
B
320 328Right-handed alpha
Helix 16
AB7
B
329 331Right-handed 310
Helix 17
AB8
B
341 343Right-handed 310
Helix 18
AB9
B
344 357Right-handed alpha
Helix 19
AC1
B
359 364Right-handed alpha
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There are 4 sheets in PDB entry 8X1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
7 11anti-parallel
Strand 4
B
121 128parallel
Strand 5
B
165 173parallel
Strand 6
B
148 154anti-parallel
Strand 7
B
62 67anti-parallel
Strand 8
B
74 79anti-parallel
Strand 9
B
32 34anti-parallel
Strand 10
B
92 93anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
212 218anti-parallel
Strand 3
B
228 231anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
212 218anti-parallel
Strand 3
B
201 207anti-parallel
Strand 4
B
314 319parallel
Strand 5
B
336 338parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
280 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il