Analysis of interatomic Contacts of Structural Units in PDB entry:
8X2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X2J entry

There are 8 chains in PDB entry 8X2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 219
B	CYS 76	LYS 1026
C	GLU 16	ARG 464
D	VAL 5	TYR 179
E	CYS 26	ASN 189
F	ILE 11	ASN 407
G	LEU 32	ARG 111
I	MET 1	TRP 37

There are107 helices in PDB entry 8X2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	37	Right-handed alpha
Helix 2	AA2	A	37	42	Right-handed alpha
Helix 3	AA3	A	54	61	Right-handed alpha
Helix 4	AA4	A	65	70	Right-handed alpha
Helix 5	AA5	A	83	92	Right-handed alpha
Helix 6	AA6	A	101	107	Right-handed alpha
Helix 7	AA7	A	129	136	Right-handed alpha
Helix 8	AA8	A	140	145	Right-handed alpha
Helix 9	AA9	A	146	150	Right-handed 310
Helix 10	AB1	A	160	170	Right-handed alpha
Helix 11	AB2	A	171	174	Right-handed 310
Helix 12	AB3	A	192	204	Right-handed alpha
Helix 13	AB4	A	207	213	Right-handed alpha
Helix 14	AB5	A	213	218	Right-handed alpha
Helix 15	AB6	B	141	146	Right-handed alpha
Helix 16	AB7	B	146	152	Right-handed alpha
Helix 17	AB8	B	168	183	Right-handed alpha
Helix 18	AB9	B	200	214	Right-handed alpha
Helix 19	AC1	B	227	239	Right-handed alpha
Helix 20	AC2	B	267	280	Right-handed alpha
Helix 21	AC3	B	299	304	Right-handed alpha
Helix 22	AC4	B	315	328	Right-handed alpha
Helix 23	AC5	B	337	351	Right-handed alpha
Helix 24	AC6	B	367	381	Right-handed alpha
Helix 25	AC7	B	400	415	Right-handed alpha
Helix 26	AC8	B	426	431	Right-handed alpha
Helix 27	AC9	B	436	442	Right-handed alpha
Helix 28	AD1	B	455	461	Right-handed alpha
Helix 29	AD2	B	499	508	Right-handed alpha
Helix 30	AD3	B	514	524	Right-handed alpha
Helix 31	AD4	B	527	538	Right-handed alpha
Helix 32	AD5	B	554	560	Right-handed alpha
Helix 33	AD6	B	583	587	Right-handed 310
Helix 34	AD7	B	588	594	Right-handed alpha
Helix 35	AD8	B	610	619	Right-handed alpha
Helix 36	AD9	B	633	645	Right-handed alpha
Helix 37	AE1	B	744	750	Right-handed alpha
Helix 38	AE2	B	752	764	Right-handed alpha
Helix 39	AE3	B	792	794	Right-handed 310
Helix 40	AE4	B	798	809	Right-handed alpha
Helix 41	AE5	B	814	820	Right-handed alpha
Helix 42	AE6	B	856	861	Right-handed alpha
Helix 43	AE7	B	909	916	Right-handed alpha
Helix 44	AE8	B	934	953	Right-handed alpha
Helix 45	AE9	B	966	972	Right-handed alpha
Helix 46	AF1	B	987	994	Right-handed alpha
Helix 47	AF2	C	24	34	Right-handed alpha
Helix 48	AF3	C	39	43	Right-handed 310
Helix 49	AF4	C	44	72	Right-handed alpha
Helix 50	AF5	C	73	76	Right-handed 310
Helix 51	AF6	C	85	112	Right-handed alpha
Helix 52	AF7	C	115	118	Right-handed 310
Helix 53	AF8	C	119	142	Right-handed alpha
Helix 54	AF9	C	144	151	Right-handed 310
Helix 55	AG1	C	166	201	Right-handed alpha
Helix 56	AG2	C	203	215	Right-handed alpha
Helix 57	AG3	C	220	255	Right-handed alpha
Helix 58	AG4	C	265	293	Right-handed alpha
Helix 59	AG5	C	300	332	Right-handed alpha
Helix 60	AG6	C	334	347	Right-handed alpha
Helix 61	AG7	C	349	361	Right-handed alpha
Helix 62	AG8	C	362	368	Right-handed 310
Helix 63	AG9	C	369	375	Right-handed alpha
Helix 64	AH1	C	375	404	Right-handed alpha
Helix 65	AH2	C	407	411	Right-handed 310
Helix 66	AH3	C	417	442	Right-handed alpha
Helix 67	AH4	C	450	464	Right-handed alpha
Helix 68	AH5	D	14	28	Right-handed alpha
Helix 69	AH6	D	44	49	Right-handed alpha
Helix 70	AH7	D	54	80	Right-handed alpha
Helix 71	AH8	D	92	96	Right-handed 310
Helix 72	AH9	D	99	123	Right-handed alpha
Helix 73	AI1	D	130	143	Right-handed 310
Helix 74	AI2	D	160	169	Right-handed alpha
Helix 75	AI3	E	67	72	Right-handed alpha
Helix 76	AI4	E	88	103	Right-handed alpha
Helix 77	AI5	E	115	121	Right-handed alpha
Helix 78	AI6	E	130	135	Right-handed alpha
Helix 79	AI7	E	137	147	Right-handed alpha
Helix 80	AI8	E	170	188	Right-handed alpha
Helix 81	AI9	F	12	37	Right-handed alpha
Helix 82	AJ1	F	39	55	Right-handed alpha
Helix 83	AJ2	F	55	71	Right-handed alpha
Helix 84	AJ3	F	73	88	Right-handed alpha
Helix 85	AJ4	F	89	97	Right-handed alpha
Helix 86	AJ5	F	97	105	Right-handed alpha
Helix 87	AJ6	F	106	112	Right-handed 310
Helix 88	AJ7	F	118	121	Right-handed 310
Helix 89	AJ8	F	122	127	Right-handed alpha
Helix 90	AJ9	F	134	140	Right-handed alpha
Helix 91	AK1	F	145	177	Right-handed alpha
Helix 92	AK2	F	181	211	Right-handed alpha
Helix 93	AK3	F	223	245	Right-handed alpha
Helix 94	AK4	F	250	255	Right-handed alpha
Helix 95	AK5	F	256	288	Right-handed alpha
Helix 96	AK6	F	293	300	Right-handed alpha
Helix 97	AK7	F	304	316	Right-handed alpha
Helix 98	AK8	F	317	324	Right-handed alpha
Helix 99	AK9	F	327	332	Right-handed alpha
Helix 100	AL1	F	332	356	Right-handed alpha
Helix 101	AL2	F	357	359	Right-handed 310
Helix 102	AL3	F	368	390	Right-handed alpha
Helix 103	AL4	F	399	406	Right-handed 310
Helix 104	AL5	G	33	55	Right-handed alpha
Helix 105	AL6	G	69	81	Right-handed alpha
Helix 106	AL7	G	98	107	Right-handed alpha
Helix 107	AL8	I	10	35	Right-handed alpha

There are 15 sheets in PDB entry 8X2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	B	83	84	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	107	first strand
Strand 2	B	112	119	anti-parallel
Strand 3	B	124	129	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	419	422	parallel
Strand 3	B	446	448	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	388	391	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	309	first strand
Strand 2	B	290	294	parallel
Strand 3	B	253	257	parallel
Strand 4	B	358	362	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	485	487	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	576	first strand
Strand 2	B	675	680	parallel
Strand 3	B	607	609	anti-parallel
Strand 4	B	663	667	parallel
Strand 5	B	650	655	anti-parallel
Strand 6	B	714	721	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	602	first strand
Strand 2	B	725	726	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	741	743	first strand
Strand 2	B	1016	1018	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	981	first strand
Strand 2	B	785	790	anti-parallel
Strand 3	B	1011	1014	parallel
Strand 4	B	998	999	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	828	829	first strand
Strand 2	B	847	848	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	867	869	first strand
Strand 2	B	875	877	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	898	899	first strand
Strand 2	B	928	929	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	36	first strand
Strand 2	D	146	151	anti-parallel
Strand 3	D	7	12	anti-parallel
Strand 4	D	173	177	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X2J