Analysis of interatomic Contacts of Structural Units in PDB entry:
8X35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X35 entry

There are 2 chains in PDB entry 8X35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 53PHE 298
B
 SER 53HIS 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 8X35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 95Right-handed alpha
Helix 2
AA2
A
98 104Right-handed alpha
Helix 3
AA3
A
105 121Right-handed alpha
Helix 4
AA4
A
133 137Right-handed 310
Helix 5
AA5
A
138 149Right-handed alpha
Helix 6
AA6
A
150 157Right-handed alpha
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
A
173 188Right-handed alpha
Helix 9
AA9
A
202 220Right-handed alpha
Helix 10
AB1
A
224 228Right-handed 310
Helix 11
AB2
A
229 237Right-handed alpha
Helix 12
AB3
A
261 265Right-handed 310
Helix 13
AB4
A
275 279Right-handed 310
Helix 14
AB5
A
280 298Right-handed alpha
Helix 15
AB6
B
87 95Right-handed alpha
Helix 16
AB7
B
102 104Right-handed 310
Helix 17
AB8
B
105 121Right-handed alpha
Helix 18
AB9
B
133 137Right-handed 310
Helix 19
AC1
B
138 149Right-handed alpha
Helix 20
AC2
B
151 157Right-handed alpha
Helix 21
AC3
B
168 172Right-handed 310
Helix 22
AC4
B
173 188Right-handed alpha
Helix 23
AC5
B
202 220Right-handed alpha
Helix 24
AC6
B
224 228Right-handed 310
Helix 25
AC7
B
229 237Right-handed alpha
Helix 26
AC8
B
261 265Right-handed 310
Helix 27
AC9
B
275 279Right-handed 310
Helix 28
AD1
B
280 294Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8X35. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 166first strand
Strand 2
A
194 201parallel
Strand 3
A
124 131parallel
Strand 4
A
80 84parallel
Strand 5
A
246 249parallel
Strand 6
A
268 271parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 166first strand
Strand 2
B
194 201parallel
Strand 3
B
124 131parallel
Strand 4
B
80 84parallel
Strand 5
B
246 249parallel
Strand 6
B
268 271parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il