Analysis of interatomic Contacts of Structural Units in PDB entry:
8X38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X38 entry

There is 1 chain in PDB entry 8X38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26GLN 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8X38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed 310
Helix 2
AA2
A
45 58Right-handed alpha
Helix 3
AA3
A
81 91Right-handed alpha
Helix 4
AA4
A
93 101Right-handed alpha
Helix 5
AA5
A
124 131Right-handed 310
Helix 6
AA6
A
139 151Right-handed alpha
Helix 7
AA7
A
152 154Right-handed 310
Helix 8
AA8
A
193 201Right-handed alpha
Helix 9
AA9
A
220 225Right-handed alpha
Helix 10
AB1
A
230 235Right-handed alpha
Helix 11
AB2
A
254 256Right-handed 310
Helix 12
AB3
A
279 287Right-handed alpha
Helix 13
AB4
A
291 300Right-handed alpha
Helix 14
AB5
A
329 332Right-handed 310
Helix 15
AB6
A
336 340Right-handed 310
Helix 16
AB7
A
341 358Right-handed alpha
Helix 17
AB8
A
362 364Right-handed 310
Helix 18
AB9
A
365 390Right-handed alpha
Helix 19
AC1
A
391 392Right-handed 310
Helix 20
AC2
A
393 397Right-handed 310
Helix 21
AC3
A
400 421Right-handed alpha
Helix 22
AC4
A
440 448Right-handed alpha
Helix 23
AC5
A
450 462Right-handed alpha
Helix 24
AC6
A
462 467Right-handed alpha
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There are 4 sheets in PDB entry 8X38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
61 65parallel
Strand 3
A
38 42parallel
Strand 4
A
184 187parallel
Strand 5
A
325 327parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
135 138anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 122first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
238 243parallel
Strand 4
A
246 253anti-parallel
Strand 5
A
258 266anti-parallel
Strand 6
A
206 219anti-parallel
Strand 7
A
304 312anti-parallel
Strand 8
A
277 278anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 166first strand
Strand 2
A
171 174anti-parallel
Strand 3
A
179 181anti-parallel
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