Analysis of interatomic Contacts of Structural Units in PDB entry:
8X3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X3V entry

There are 2 chains in PDB entry 8X3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 109GLN 325
B
 CYS 110GLN 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 8X3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 141Right-handed alpha
Helix 2
AA2
A
176 185Right-handed alpha
Helix 3
AA3
A
226 232Right-handed alpha
Helix 4
AA4
A
257 262Right-handed alpha
Helix 5
AA5
A
277 281Right-handed 310
Helix 6
AA6
A
297 321Right-handed alpha
Helix 7
AA7
B
124 141Right-handed alpha
Helix 8
AA8
B
177 186Right-handed alpha
Helix 9
AA9
B
257 262Right-handed alpha
Helix 10
AB1
B
277 281Right-handed 310
Helix 11
AB2
B
297 321Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8X3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
164 170parallel
Strand 3
A
209 214parallel
Strand 4
A
113 118parallel
Strand 5
A
236 242parallel
Strand 6
A
285 289anti-parallel
Strand 7
A
295 296anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
253 256anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
164 170parallel
Strand 3
B
209 214parallel
Strand 4
B
113 119parallel
Strand 5
B
236 242parallel
Strand 6
B
285 289anti-parallel
Strand 7
B
295 296anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 250first strand
Strand 2
B
253 256anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il