Analysis of interatomic Contacts of Structural Units in PDB entry:
8X3X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X3X entry

There are 2 chains in PDB entry 8X3X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ASP 558
B
 LYS 1TYR 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8X3X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
29 40Right-handed alpha
Helix 4
AA4
A
49 65Right-handed alpha
Helix 5
AA5
A
75 81Right-handed alpha
Helix 6
AA6
A
81 92Right-handed alpha
Helix 7
AA7
A
103 107Right-handed 310
Helix 8
AA8
A
121 127Right-handed alpha
Helix 9
AA9
A
128 130Right-handed 310
Helix 10
AB1
A
138 140Right-handed 310
Helix 11
AB2
A
141 155Right-handed alpha
Helix 12
AB3
A
168 171Right-handed 310
Helix 13
AB4
A
180 184Right-handed 310
Helix 14
AB5
A
192 206Right-handed alpha
Helix 15
AB6
A
215 220Right-handed alpha
Helix 16
AB7
A
222 234Right-handed alpha
Helix 17
AB8
A
263 272Right-handed alpha
Helix 18
AB9
A
294 298Right-handed 310
Helix 19
AC1
A
309 313Right-handed 310
Helix 20
AC2
A
326 342Right-handed alpha
Helix 21
AC3
A
373 385Right-handed alpha
Helix 22
AC4
A
396 406Right-handed alpha
Helix 23
AC5
A
424 437Right-handed alpha
Helix 24
AC6
A
448 455Right-handed alpha
Helix 25
AC7
A
457 465Right-handed alpha
Helix 26
AC8
A
478 489Right-handed alpha
Helix 27
AC9
A
503 511Right-handed alpha
Helix 28
AD1
A
520 535Right-handed alpha
Helix 29
AD2
B
5 16Right-handed alpha
Helix 30
AD3
B
26 28Right-handed 310
Helix 31
AD4
B
29 40Right-handed alpha
Helix 32
AD5
B
49 65Right-handed alpha
Helix 33
AD6
B
75 81Right-handed alpha
Helix 34
AD7
B
81 91Right-handed alpha
Helix 35
AD8
B
103 107Right-handed 310
Helix 36
AD9
B
121 127Right-handed alpha
Helix 37
AE1
B
128 130Right-handed 310
Helix 38
AE2
B
138 140Right-handed 310
Helix 39
AE3
B
141 155Right-handed alpha
Helix 40
AE4
B
168 171Right-handed 310
Helix 41
AE5
B
180 184Right-handed 310
Helix 42
AE6
B
192 206Right-handed alpha
Helix 43
AE7
B
215 221Right-handed alpha
Helix 44
AE8
B
222 234Right-handed alpha
Helix 45
AE9
B
263 272Right-handed alpha
Helix 46
AF1
B
294 298Right-handed 310
Helix 47
AF2
B
309 313Right-handed 310
Helix 48
AF3
B
326 342Right-handed alpha
Helix 49
AF4
B
373 385Right-handed alpha
Helix 50
AF5
B
396 406Right-handed alpha
Helix 51
AF6
B
424 437Right-handed alpha
Helix 52
AF7
B
448 455Right-handed alpha
Helix 53
AF8
B
457 465Right-handed alpha
Helix 54
AF9
B
478 489Right-handed alpha
Helix 55
AG1
B
503 511Right-handed alpha
Helix 56
AG2
B
520 535Right-handed alpha
Helix 57
AG3
B
557 564Right-handed alpha
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There are 8 sheets in PDB entry 8X3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
173 175anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
20 23parallel
Strand 3
A
68 72parallel
Strand 4
A
95 101parallel
Strand 5
A
161 166parallel
Strand 6
A
132 135parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
237 239parallel
Strand 3
A
209 213parallel
Strand 4
A
277 281parallel
Strand 5
A
302 307parallel
Strand 6
A
321 324parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
390 393parallel
Strand 3
A
442 447parallel
Strand 4
A
469 474parallel
Strand 5
A
538 543parallel
Strand 6
A
514 518parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
173 175anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
20 23parallel
Strand 3
B
68 72parallel
Strand 4
B
95 101parallel
Strand 5
B
161 166parallel
Strand 6
B
132 135parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
237 239parallel
Strand 3
B
210 213parallel
Strand 4
B
277 281parallel
Strand 5
B
302 307parallel
Strand 6
B
321 324parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 416first strand
Strand 2
B
390 393parallel
Strand 3
B
442 447parallel
Strand 4
B
469 474parallel
Strand 5
B
538 543parallel
Strand 6
B
514 518parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il