Analysis of interatomic Contacts of Structural Units in PDB entry:
8X5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X5D entry

There are 13 chains in PDB entry 8X5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	THR 2	VAL 236
G	ILE 10	PHE 209
N	MET 1	GLU 375
L	THR 2	VAL 236
O	G 4	G 50
J	THR 2	VAL 236
I	THR 2	VAL 236
H	THR 2	VAL 236
F	SER 2	THR 125
E	MET 1	SER 126
D	MET 1	THR 125
C	SER 2	THR 125
B	ASP 7	LYS 118

There are 77 helices in PDB entry 8X5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	50	69	Right-handed alpha
Helix 2	AA2	K	108	115	Right-handed alpha
Helix 3	AA3	K	173	193	Right-handed alpha
Helix 4	AA4	K	199	203	Right-handed 310
Helix 5	AA5	K	225	234	Right-handed alpha
Helix 6	AA6	G	51	56	Right-handed 310
Helix 7	AA7	N	44	49	Right-handed alpha
Helix 8	AA8	N	54	63	Right-handed alpha
Helix 9	AA9	N	73	79	Right-handed alpha
Helix 10	AB1	N	137	156	Right-handed alpha
Helix 11	AB2	N	168	184	Right-handed alpha
Helix 12	AB3	N	196	203	Right-handed 310
Helix 13	AB4	N	264	273	Right-handed alpha
Helix 14	AB5	N	273	286	Right-handed alpha
Helix 15	AB6	N	286	291	Right-handed alpha
Helix 16	AB7	N	312	316	Right-handed 310
Helix 17	AB8	N	322	329	Right-handed alpha
Helix 18	AB9	L	51	70	Right-handed alpha
Helix 19	AC1	L	83	88	Right-handed alpha
Helix 20	AC2	L	108	115	Right-handed alpha
Helix 21	AC3	L	173	190	Right-handed alpha
Helix 22	AC4	L	225	230	Right-handed alpha
Helix 23	AC5	J	51	69	Right-handed alpha
Helix 24	AC6	J	81	86	Right-handed alpha
Helix 25	AC7	J	108	115	Right-handed alpha
Helix 26	AC8	J	177	185	Right-handed alpha
Helix 27	AC9	J	186	193	Right-handed alpha
Helix 28	AD1	J	222	233	Right-handed alpha
Helix 29	AD2	I	50	70	Right-handed alpha
Helix 30	AD3	I	76	80	Right-handed 310
Helix 31	AD4	I	109	114	Right-handed alpha
Helix 32	AD5	I	177	191	Right-handed alpha
Helix 33	AD6	I	225	230	Right-handed alpha
Helix 34	AD7	I	232	236	Right-handed 310
Helix 35	AD8	H	50	70	Right-handed alpha
Helix 36	AD9	H	76	80	Right-handed 310
Helix 37	AE1	H	81	88	Right-handed alpha
Helix 38	AE2	H	108	113	Right-handed alpha
Helix 39	AE3	H	114	116	Right-handed 310
Helix 40	AE4	H	180	194	Right-handed alpha
Helix 41	AE5	H	225	233	Right-handed alpha
Helix 42	AE6	F	7	18	Right-handed alpha
Helix 43	AE7	F	33	50	Right-handed alpha
Helix 44	AE8	F	57	73	Right-handed alpha
Helix 45	AE9	F	77	88	Right-handed alpha
Helix 46	AF1	F	88	96	Right-handed alpha
Helix 47	AF2	F	99	111	Right-handed alpha
Helix 48	AF3	F	114	120	Right-handed alpha
Helix 49	AF4	E	7	18	Right-handed alpha
Helix 50	AF5	E	30	32	Right-handed 310
Helix 51	AF6	E	33	48	Right-handed alpha
Helix 52	AF7	E	62	76	Right-handed alpha
Helix 53	AF8	E	77	88	Right-handed alpha
Helix 54	AF9	E	88	95	Right-handed alpha
Helix 55	AG1	E	103	120	Right-handed alpha
Helix 56	AG2	D	12	17	Right-handed alpha
Helix 57	AG3	D	33	38	Right-handed alpha
Helix 58	AG4	D	38	48	Right-handed alpha
Helix 59	AG5	D	60	76	Right-handed alpha
Helix 60	AG6	D	77	88	Right-handed alpha
Helix 61	AG7	D	99	120	Right-handed alpha
Helix 62	AG8	C	7	18	Right-handed alpha
Helix 63	AG9	C	29	32	Right-handed 310
Helix 64	AH1	C	33	48	Right-handed alpha
Helix 65	AH2	C	56	77	Right-handed alpha
Helix 66	AH3	C	77	87	Right-handed alpha
Helix 67	AH4	C	89	94	Right-handed alpha
Helix 68	AH5	C	99	120	Right-handed alpha
Helix 69	AH6	B	8	13	Right-handed alpha
Helix 70	AH7	B	31	36	Right-handed alpha
Helix 71	AH8	B	37	45	Right-handed alpha
Helix 72	AH9	B	65	77	Right-handed alpha
Helix 73	AI1	B	78	80	Right-handed 310
Helix 74	AI2	B	81	86	Right-handed alpha
Helix 75	AI3	B	88	93	Right-handed alpha
Helix 76	AI4	B	102	106	Right-handed 310
Helix 77	AI5	B	108	116	Right-handed alpha

There are 25 sheets in PDB entry 8X5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	207	219	first strand
Strand 2	K	6	16	anti-parallel
Strand 3	K	149	158	anti-parallel
Strand 4	K	99	102	anti-parallel
Strand 5	J	202	203	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	49	first strand
Strand 2	K	104	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	129	first strand
Strand 2	K	136	144	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	128	first strand
Strand 2	G	137	144	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	7	first strand
Strand 2	N	252	255	anti-parallel
Strand 3	N	205	207	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	247	250	first strand
Strand 2	N	9	14	anti-parallel
Strand 3	N	366	372	anti-parallel
Strand 4	N	303	305	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	21	27	first strand
Strand 2	N	122	126	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	32	34	first strand
Strand 2	N	37	40	anti-parallel
Strand 3	N	93	95	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	220	221	first strand
Strand 2	N	239	240	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	224	226	first strand
Strand 2	N	352	356	anti-parallel
Strand 3	N	361	363	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	99	100	first strand
Strand 2	L	153	158	anti-parallel
Strand 3	L	6	16	anti-parallel
Strand 4	L	149	150	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	99	100	first strand
Strand 2	L	153	158	anti-parallel
Strand 3	L	6	16	anti-parallel
Strand 4	L	207	214	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	104	105	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	128	first strand
Strand 2	L	137	144	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	150	first strand
Strand 2	J	6	16	anti-parallel
Strand 3	J	207	218	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	150	first strand
Strand 2	J	6	16	anti-parallel
Strand 3	J	153	158	anti-parallel
Strand 4	J	99	102	anti-parallel
Strand 5	I	202	203	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	104	105	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	121	126	first strand
Strand 2	J	139	144	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	207	218	first strand
Strand 2	I	6	16	anti-parallel
Strand 3	I	149	158	anti-parallel
Strand 4	I	99	102	anti-parallel
Strand 5	H	202	203	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	49	first strand
Strand 2	I	104	105	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	129	first strand
Strand 2	I	136	144	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	101	first strand
Strand 2	H	153	158	anti-parallel
Strand 3	H	6	16	anti-parallel
Strand 4	H	149	150	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	101	first strand
Strand 2	H	153	158	anti-parallel
Strand 3	H	6	16	anti-parallel
Strand 4	H	207	216	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	49	first strand
Strand 2	H	104	105	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	129	first strand
Strand 2	H	136	144	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X5D