Analysis of interatomic Contacts of Structural Units in PDB entry:
8X5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X5I entry

There are 4 chains in PDB entry 8X5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 578
B	MET 1	GLY 578
C	MET 1	GLY 578
D	MET 1	GLY 578

There are 88 helices in PDB entry 8X5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	46	Right-handed alpha
Helix 2	AA2	A	47	52	Right-handed alpha
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	83	94	Right-handed alpha
Helix 5	AA5	A	95	97	Right-handed 310
Helix 6	AA6	A	98	102	Right-handed 310
Helix 7	AA7	A	143	147	Right-handed 310
Helix 8	AA8	A	260	277	Right-handed alpha
Helix 9	AA9	A	295	309	Right-handed alpha
Helix 10	AB1	A	322	326	Right-handed 310
Helix 11	AB2	A	358	370	Right-handed alpha
Helix 12	AB3	A	380	394	Right-handed alpha
Helix 13	AB4	A	413	423	Right-handed alpha
Helix 14	AB5	A	448	458	Right-handed alpha
Helix 15	AB6	A	475	493	Right-handed alpha
Helix 16	AB7	A	494	503	Right-handed alpha
Helix 17	AB8	A	511	529	Right-handed alpha
Helix 18	AB9	A	532	538	Right-handed alpha
Helix 19	AC1	A	540	550	Right-handed alpha
Helix 20	AC2	A	556	562	Right-handed alpha
Helix 21	AC3	A	566	574	Right-handed alpha
Helix 22	AC4	B	34	47	Right-handed alpha
Helix 23	AC5	B	47	52	Right-handed alpha
Helix 24	AC6	B	60	64	Right-handed 310
Helix 25	AC7	B	83	91	Right-handed alpha
Helix 26	AC8	B	93	97	Right-handed 310
Helix 27	AC9	B	159	177	Right-handed alpha
Helix 28	AD1	B	188	194	Right-handed alpha
Helix 29	AD2	B	202	217	Right-handed alpha
Helix 30	AD3	B	260	277	Right-handed alpha
Helix 31	AD4	B	278	281	Right-handed 310
Helix 32	AD5	B	295	308	Right-handed alpha
Helix 33	AD6	B	321	326	Right-handed 310
Helix 34	AD7	B	355	357	Right-handed 310
Helix 35	AD8	B	358	370	Right-handed alpha
Helix 36	AD9	B	380	394	Right-handed alpha
Helix 37	AE1	B	397	402	Right-handed alpha
Helix 38	AE2	B	412	423	Right-handed alpha
Helix 39	AE3	B	448	457	Right-handed alpha
Helix 40	AE4	B	476	493	Right-handed alpha
Helix 41	AE5	B	493	503	Right-handed alpha
Helix 42	AE6	B	511	529	Right-handed alpha
Helix 43	AE7	B	532	538	Right-handed alpha
Helix 44	AE8	B	543	550	Right-handed alpha
Helix 45	AE9	B	553	562	Right-handed alpha
Helix 46	AF1	B	566	574	Right-handed alpha
Helix 47	AF2	C	36	47	Right-handed alpha
Helix 48	AF3	C	47	52	Right-handed alpha
Helix 49	AF4	C	60	64	Right-handed 310
Helix 50	AF5	C	83	94	Right-handed alpha
Helix 51	AF6	C	262	278	Right-handed alpha
Helix 52	AF7	C	295	308	Right-handed alpha
Helix 53	AF8	C	321	326	Right-handed 310
Helix 54	AF9	C	358	370	Right-handed alpha
Helix 55	AG1	C	380	394	Right-handed alpha
Helix 56	AG2	C	413	424	Right-handed alpha
Helix 57	AG3	C	448	458	Right-handed alpha
Helix 58	AG4	C	476	493	Right-handed alpha
Helix 59	AG5	C	493	503	Right-handed alpha
Helix 60	AG6	C	511	520	Right-handed alpha
Helix 61	AG7	C	521	529	Right-handed alpha
Helix 62	AG8	C	532	538	Right-handed alpha
Helix 63	AG9	C	540	551	Right-handed alpha
Helix 64	AH1	C	555	562	Right-handed alpha
Helix 65	AH2	C	563	565	Right-handed 310
Helix 66	AH3	C	566	574	Right-handed alpha
Helix 67	AH4	D	34	47	Right-handed alpha
Helix 68	AH5	D	47	52	Right-handed alpha
Helix 69	AH6	D	60	64	Right-handed 310
Helix 70	AH7	D	83	91	Right-handed alpha
Helix 71	AH8	D	145	147	Right-handed 310
Helix 72	AH9	D	159	168	Right-handed alpha
Helix 73	AI1	D	181	192	Right-handed alpha
Helix 74	AI2	D	205	211	Right-handed alpha
Helix 75	AI3	D	260	277	Right-handed alpha
Helix 76	AI4	D	295	308	Right-handed alpha
Helix 77	AI5	D	321	326	Right-handed 310
Helix 78	AI6	D	358	370	Right-handed alpha
Helix 79	AI7	D	380	394	Right-handed alpha
Helix 80	AI8	D	412	423	Right-handed alpha
Helix 81	AI9	D	448	457	Right-handed alpha
Helix 82	AJ1	D	475	493	Right-handed alpha
Helix 83	AJ2	D	493	503	Right-handed alpha
Helix 84	AJ3	D	511	529	Right-handed alpha
Helix 85	AJ4	D	532	540	Right-handed alpha
Helix 86	AJ5	D	542	550	Right-handed alpha
Helix 87	AJ6	D	553	562	Right-handed alpha
Helix 88	AJ7	D	566	574	Right-handed alpha

There are 20 sheets in PDB entry 8X5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	3	10	anti-parallel
Strand 3	A	69	75	anti-parallel
Strand 4	A	105	113	anti-parallel
Strand 5	A	120	127	anti-parallel
Strand 6	A	134	135	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	282	288	parallel
Strand 3	A	315	318	parallel
Strand 4	A	25	29	parallel
Strand 5	A	331	336	parallel
Strand 6	A	344	349	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	407	first strand
Strand 2	A	374	378	parallel
Strand 3	A	426	431	parallel
Strand 4	A	505	507	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	444	447	anti-parallel
Strand 3	A	465	466	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	20	first strand
Strand 2	B	2	11	anti-parallel
Strand 3	B	69	76	anti-parallel
Strand 4	B	104	114	anti-parallel
Strand 5	B	119	127	anti-parallel
Strand 6	B	134	135	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	282	288	parallel
Strand 3	B	315	318	parallel
Strand 4	B	24	29	parallel
Strand 5	B	331	338	parallel
Strand 6	B	342	349	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	142	143	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	D	242	247	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	407	first strand
Strand 2	B	374	378	parallel
Strand 3	B	426	431	parallel
Strand 4	B	505	507	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	444	447	anti-parallel
Strand 3	B	465	466	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	2	8	anti-parallel
Strand 3	C	69	76	anti-parallel
Strand 4	C	104	113	anti-parallel
Strand 5	C	120	127	anti-parallel
Strand 6	C	134	135	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	282	288	parallel
Strand 3	C	314	318	parallel
Strand 4	C	25	29	parallel
Strand 5	C	331	336	parallel
Strand 6	C	344	349	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	407	first strand
Strand 2	C	374	378	parallel
Strand 3	C	426	431	parallel
Strand 4	C	505	507	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	437	first strand
Strand 2	C	444	447	anti-parallel
Strand 3	C	465	466	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	20	first strand
Strand 2	D	2	11	anti-parallel
Strand 3	D	69	76	anti-parallel
Strand 4	D	104	111	anti-parallel
Strand 5	D	123	127	anti-parallel
Strand 6	D	134	135	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	282	288	parallel
Strand 3	D	315	318	parallel
Strand 4	D	24	29	parallel
Strand 5	D	331	338	parallel
Strand 6	D	342	349	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	119	120	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	142	143	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	407	first strand
Strand 2	D	374	378	parallel
Strand 3	D	426	431	parallel
Strand 4	D	505	507	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	444	447	anti-parallel
Strand 3	D	465	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X5I