Analysis of interatomic Contacts of Structural Units in PDB entry:
8X5N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X5N entry

There are 8 chains in PDB entry 8X5N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 578
E	MET 1	SER 200
F	MET 1	SER 200
G	MET 1	SER 200
H	MET 1	SER 200
B	MET 1	GLY 578
C	MET 1	GLY 578
D	MET 1	GLY 578

There are114 helices in PDB entry 8X5N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	47	Right-handed alpha
Helix 2	AA2	A	47	52	Right-handed alpha
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	83	94	Right-handed alpha
Helix 5	AA5	A	98	102	Right-handed 310
Helix 6	AA6	A	145	147	Right-handed 310
Helix 7	AA7	A	260	277	Right-handed alpha
Helix 8	AA8	A	295	308	Right-handed alpha
Helix 9	AA9	A	321	326	Right-handed 310
Helix 10	AB1	A	358	370	Right-handed alpha
Helix 11	AB2	A	380	394	Right-handed alpha
Helix 12	AB3	A	413	423	Right-handed alpha
Helix 13	AB4	A	448	458	Right-handed alpha
Helix 14	AB5	A	475	493	Right-handed alpha
Helix 15	AB6	A	493	502	Right-handed alpha
Helix 16	AB7	A	511	529	Right-handed alpha
Helix 17	AB8	A	532	540	Right-handed alpha
Helix 18	AB9	A	540	550	Right-handed alpha
Helix 19	AC1	A	556	562	Right-handed alpha
Helix 20	AC2	A	566	574	Right-handed alpha
Helix 21	AC3	E	2	14	Right-handed alpha
Helix 22	AC4	E	27	43	Right-handed alpha
Helix 23	AC5	E	55	67	Right-handed alpha
Helix 24	AC6	E	78	86	Right-handed alpha
Helix 25	AC7	E	86	95	Right-handed alpha
Helix 26	AC8	E	114	125	Right-handed alpha
Helix 27	AC9	E	137	150	Right-handed alpha
Helix 28	AD1	E	150	160	Right-handed alpha
Helix 29	AD2	E	173	186	Right-handed alpha
Helix 30	AD3	F	2	13	Right-handed alpha
Helix 31	AD4	F	27	43	Right-handed alpha
Helix 32	AD5	F	55	67	Right-handed alpha
Helix 33	AD6	F	78	86	Right-handed alpha
Helix 34	AD7	F	90	95	Right-handed alpha
Helix 35	AD8	F	114	124	Right-handed alpha
Helix 36	AD9	F	137	150	Right-handed alpha
Helix 37	AE1	F	151	160	Right-handed alpha
Helix 38	AE2	F	173	186	Right-handed alpha
Helix 39	AE3	G	2	13	Right-handed alpha
Helix 40	AE4	G	27	43	Right-handed alpha
Helix 41	AE5	G	55	67	Right-handed alpha
Helix 42	AE6	G	78	86	Right-handed alpha
Helix 43	AE7	G	86	95	Right-handed alpha
Helix 44	AE8	G	114	124	Right-handed alpha
Helix 45	AE9	G	137	150	Right-handed alpha
Helix 46	AF1	G	150	160	Right-handed alpha
Helix 47	AF2	G	168	172	Right-handed 310
Helix 48	AF3	G	173	186	Right-handed alpha
Helix 49	AF4	H	2	13	Right-handed alpha
Helix 50	AF5	H	27	43	Right-handed alpha
Helix 51	AF6	H	55	67	Right-handed alpha
Helix 52	AF7	H	78	86	Right-handed alpha
Helix 53	AF8	H	86	95	Right-handed alpha
Helix 54	AF9	H	114	125	Right-handed alpha
Helix 55	AG1	H	137	150	Right-handed alpha
Helix 56	AG2	H	151	160	Right-handed alpha
Helix 57	AG3	H	173	186	Right-handed alpha
Helix 58	AG4	B	35	47	Right-handed alpha
Helix 59	AG5	B	47	52	Right-handed alpha
Helix 60	AG6	B	60	64	Right-handed 310
Helix 61	AG7	B	83	94	Right-handed alpha
Helix 62	AG8	B	98	102	Right-handed 310
Helix 63	AG9	B	260	277	Right-handed alpha
Helix 64	AH1	B	295	309	Right-handed alpha
Helix 65	AH2	B	321	326	Right-handed 310
Helix 66	AH3	B	358	370	Right-handed alpha
Helix 67	AH4	B	380	394	Right-handed alpha
Helix 68	AH5	B	413	423	Right-handed alpha
Helix 69	AH6	B	448	458	Right-handed alpha
Helix 70	AH7	B	475	493	Right-handed alpha
Helix 71	AH8	B	493	502	Right-handed alpha
Helix 72	AH9	B	511	529	Right-handed alpha
Helix 73	AI1	B	532	540	Right-handed alpha
Helix 74	AI2	B	540	550	Right-handed alpha
Helix 75	AI3	B	556	562	Right-handed alpha
Helix 76	AI4	B	566	574	Right-handed alpha
Helix 77	AI5	C	35	47	Right-handed alpha
Helix 78	AI6	C	47	52	Right-handed alpha
Helix 79	AI7	C	60	64	Right-handed 310
Helix 80	AI8	C	83	94	Right-handed alpha
Helix 81	AI9	C	260	277	Right-handed alpha
Helix 82	AJ1	C	295	309	Right-handed alpha
Helix 83	AJ2	C	321	326	Right-handed 310
Helix 84	AJ3	C	358	370	Right-handed alpha
Helix 85	AJ4	C	380	394	Right-handed alpha
Helix 86	AJ5	C	413	423	Right-handed alpha
Helix 87	AJ6	C	448	458	Right-handed alpha
Helix 88	AJ7	C	475	493	Right-handed alpha
Helix 89	AJ8	C	493	502	Right-handed alpha
Helix 90	AJ9	C	511	529	Right-handed alpha
Helix 91	AK1	C	532	540	Right-handed alpha
Helix 92	AK2	C	540	552	Right-handed alpha
Helix 93	AK3	C	556	562	Right-handed alpha
Helix 94	AK4	C	566	574	Right-handed alpha
Helix 95	AK5	D	35	47	Right-handed alpha
Helix 96	AK6	D	47	52	Right-handed alpha
Helix 97	AK7	D	60	64	Right-handed 310
Helix 98	AK8	D	83	94	Right-handed alpha
Helix 99	AK9	D	260	278	Right-handed alpha
Helix 100	AL1	D	295	308	Right-handed alpha
Helix 101	AL2	D	321	326	Right-handed 310
Helix 102	AL3	D	355	357	Right-handed 310
Helix 103	AL4	D	358	370	Right-handed alpha
Helix 104	AL5	D	380	394	Right-handed alpha
Helix 105	AL6	D	413	423	Right-handed alpha
Helix 106	AL7	D	448	458	Right-handed alpha
Helix 107	AL8	D	475	493	Right-handed alpha
Helix 108	AL9	D	493	502	Right-handed alpha
Helix 109	AM1	D	512	529	Right-handed alpha
Helix 110	AM2	D	532	540	Right-handed alpha
Helix 111	AM3	D	540	550	Right-handed alpha
Helix 112	AM4	D	556	562	Right-handed alpha
Helix 113	AM5	D	563	565	Right-handed 310
Helix 114	AM6	D	566	574	Right-handed alpha

There are 26 sheets in PDB entry 8X5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	A	3	9	anti-parallel
Strand 3	A	69	75	anti-parallel
Strand 4	A	105	113	anti-parallel
Strand 5	A	120	127	anti-parallel
Strand 6	A	134	135	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	282	288	parallel
Strand 3	A	315	318	parallel
Strand 4	A	25	29	parallel
Strand 5	A	331	336	parallel
Strand 6	A	344	349	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	142	143	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	407	first strand
Strand 2	A	374	378	parallel
Strand 3	A	426	432	parallel
Strand 4	A	505	508	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	444	447	anti-parallel
Strand 3	A	465	466	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	19	first strand
Strand 2	E	190	193	parallel
Strand 3	E	161	166	parallel
Strand 4	E	48	53	parallel
Strand 5	E	74	77	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	112	first strand
Strand 2	E	130	131	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	190	193	parallel
Strand 3	F	161	166	parallel
Strand 4	F	48	53	parallel
Strand 5	F	74	77	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	20	first strand
Strand 2	G	190	194	parallel
Strand 3	G	161	166	parallel
Strand 4	G	48	53	parallel
Strand 5	G	74	77	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	105	first strand
Strand 2	G	127	128	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	19	first strand
Strand 2	H	190	193	parallel
Strand 3	H	161	166	parallel
Strand 4	H	48	53	parallel
Strand 5	H	74	77	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	3	9	anti-parallel
Strand 3	B	69	75	anti-parallel
Strand 4	B	105	113	anti-parallel
Strand 5	B	120	127	anti-parallel
Strand 6	B	134	135	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	282	288	parallel
Strand 3	B	315	318	parallel
Strand 4	B	25	29	parallel
Strand 5	B	331	336	parallel
Strand 6	B	344	349	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	142	143	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	407	first strand
Strand 2	B	374	378	parallel
Strand 3	B	426	432	parallel
Strand 4	B	505	508	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	444	447	anti-parallel
Strand 3	B	465	466	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	3	9	anti-parallel
Strand 3	C	69	75	anti-parallel
Strand 4	C	105	113	anti-parallel
Strand 5	C	120	127	anti-parallel
Strand 6	C	134	135	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	282	288	parallel
Strand 3	C	315	318	parallel
Strand 4	C	25	29	parallel
Strand 5	C	331	336	parallel
Strand 6	C	344	349	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	142	143	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	407	first strand
Strand 2	C	374	378	parallel
Strand 3	C	426	432	parallel
Strand 4	C	505	508	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	437	first strand
Strand 2	C	444	447	anti-parallel
Strand 3	C	465	466	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	20	first strand
Strand 2	D	3	9	anti-parallel
Strand 3	D	69	75	anti-parallel
Strand 4	D	105	113	anti-parallel
Strand 5	D	120	127	anti-parallel
Strand 6	D	134	135	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	282	288	parallel
Strand 3	D	315	318	parallel
Strand 4	D	25	29	parallel
Strand 5	D	331	336	parallel
Strand 6	D	344	349	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	142	143	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	407	first strand
Strand 2	D	374	378	parallel
Strand 3	D	426	432	parallel
Strand 4	D	505	508	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	444	447	anti-parallel
Strand 3	D	465	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X5N

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X5N