Analysis of interatomic Contacts of Structural Units in PDB entry:
8X5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X5V entry

There are 4 chains in PDB entry 8X5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 1076
B
 G 1 U 110
C
 T -8 C 20
D
 T 1 A 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8X5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 77Right-handed alpha
Helix 2
AA2
A
82 91Right-handed alpha
Helix 3
AA3
A
97 105Right-handed alpha
Helix 4
AA4
A
111 123Right-handed alpha
Helix 5
AA5
A
141 158Right-handed alpha
Helix 6
AA6
A
161 169Right-handed alpha
Helix 7
AA7
A
170 173Right-handed 310
Helix 8
AA8
A
188 206Right-handed alpha
Helix 9
AA9
A
212 225Right-handed alpha
Helix 10
AB1
A
233 239Right-handed alpha
Helix 11
AB2
A
255 269Right-handed alpha
Helix 12
AB3
A
282 296Right-handed alpha
Helix 13
AB4
A
301 309Right-handed alpha
Helix 14
AB5
A
326 334Right-handed alpha
Helix 15
AB6
A
339 351Right-handed alpha
Helix 16
AB7
A
361 375Right-handed alpha
Helix 17
AB8
A
377 386Right-handed alpha
Helix 18
AB9
A
406 414Right-handed alpha
Helix 19
AC1
A
425 438Right-handed alpha
Helix 20
AC2
A
441 450Right-handed alpha
Helix 21
AC3
A
473 495Right-handed alpha
Helix 22
AC4
A
669 683Right-handed alpha
Helix 23
AC5
A
698 709Right-handed alpha
Helix 24
AC6
A
720 731Right-handed alpha
Helix 25
AC7
A
733 748Right-handed alpha
Helix 26
AC8
A
764 774Right-handed alpha
Helix 27
AC9
A
776 783Right-handed alpha
Helix 28
AD1
A
790 796Right-handed alpha
Helix 29
AD2
A
840 842Right-handed 310
Helix 30
AD3
A
854 857Right-handed 310
Helix 31
AD4
A
858 872Right-handed alpha
Helix 32
AD5
A
875 880Right-handed alpha
Helix 33
AD6
A
944 948Right-handed 310
Helix 34
AD7
A
961 965Right-handed 310
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There are 9 sheets in PDB entry 8X5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
694 696first strand
Strand 2
A
499 504parallel
Strand 3
A
4 9parallel
Strand 4
A
13 20anti-parallel
Strand 5
A
25 33anti-parallel
Strand 6
A
803 804parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
271 273anti-parallel
Strand 3
A
315 316anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
335 337anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
821 825first strand
Strand 2
A
831 838anti-parallel
Strand 3
A
899 906anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
885 887first strand
Strand 2
A
893 896anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
910 912first strand
Strand 2
A
917 919anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 942first strand
Strand 2
A
924 932anti-parallel
Strand 3
A
973 978anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 955first strand
Strand 2
A
966 967anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1008 1011first strand
Strand 2
A
994 998anti-parallel
Strand 3
A
1037 1043anti-parallel
Strand 4
A
1027 1031anti-parallel
Strand 5
A
1013 1021anti-parallel
Strand 6
A
983 987anti-parallel
Strand 7
A
1049 1055anti-parallel
Strand 8
A
1061 1063anti-parallel
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