Analysis of interatomic Contacts of Structural Units in PDB entry:
8X6F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X6F entry

There are 9 chains in PDB entry 8X6F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	LEU 227
B	PRO 7	LEU 227
C	GLY 3	THR 1155
D	ASP 3	ALA 1193
F	ASN 3	ILE 64
G	VAL 3	ALA 71
E	ASP 97	MET 367
N	A 22	A 73
T	T 13	T 64

There are129 helices in PDB entry 8X6F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	47	Right-handed alpha
Helix 2	AA2	A	74	84	Right-handed alpha
Helix 3	AA3	A	110	112	Right-handed 310
Helix 4	AA4	A	150	155	Right-handed alpha
Helix 5	AA5	A	205	226	Right-handed alpha
Helix 6	AA6	B	31	47	Right-handed alpha
Helix 7	AA7	B	74	83	Right-handed alpha
Helix 8	AA8	B	110	112	Right-handed 310
Helix 9	AA9	B	150	155	Right-handed alpha
Helix 10	AB1	B	205	226	Right-handed alpha
Helix 11	AB2	C	30	43	Right-handed alpha
Helix 12	AB3	C	43	53	Right-handed alpha
Helix 13	AB4	C	77	84	Right-handed alpha
Helix 14	AB5	C	192	200	Right-handed alpha
Helix 15	AB6	C	203	212	Right-handed alpha
Helix 16	AB7	C	214	224	Right-handed alpha
Helix 17	AB8	C	228	241	Right-handed alpha
Helix 18	AB9	C	247	259	Right-handed alpha
Helix 19	AC1	C	267	279	Right-handed alpha
Helix 20	AC2	C	280	285	Right-handed alpha
Helix 21	AC3	C	311	325	Right-handed alpha
Helix 22	AC4	C	376	392	Right-handed alpha
Helix 23	AC5	C	402	404	Right-handed 310
Helix 24	AC6	C	410	437	Right-handed alpha
Helix 25	AC7	C	443	448	Right-handed alpha
Helix 26	AC8	C	450	464	Right-handed alpha
Helix 27	AC9	C	474	483	Right-handed alpha
Helix 28	AD1	C	499	504	Right-handed alpha
Helix 29	AD2	C	506	510	Right-handed 310
Helix 30	AD3	C	564	569	Right-handed alpha
Helix 31	AD4	C	605	607	Right-handed 310
Helix 32	AD5	C	613	617	Right-handed 310
Helix 33	AD6	C	621	625	Right-handed 310
Helix 34	AD7	C	627	631	Right-handed 310
Helix 35	AD8	C	632	644	Right-handed alpha
Helix 36	AD9	C	660	670	Right-handed alpha
Helix 37	AE1	C	778	783	Right-handed alpha
Helix 38	AE2	C	817	821	Right-handed 310
Helix 39	AE3	C	854	865	Right-handed alpha
Helix 40	AE4	C	940	944	Right-handed 310
Helix 41	AE5	C	960	966	Right-handed alpha
Helix 42	AE6	C	968	984	Right-handed alpha
Helix 43	AE7	C	996	1008	Right-handed alpha
Helix 44	AE8	C	1076	1086	Right-handed alpha
Helix 45	AE9	C	1088	1097	Right-handed alpha
Helix 46	AF1	C	1102	1116	Right-handed alpha
Helix 47	AF2	C	1125	1138	Right-handed alpha
Helix 48	AF3	D	3	7	Right-handed 310
Helix 49	AF4	D	16	23	Right-handed alpha
Helix 50	AF5	D	48	53	Right-handed alpha
Helix 51	AF6	D	67	71	Right-handed 310
Helix 52	AF7	D	84	90	Right-handed 310
Helix 53	AF8	D	103	108	Right-handed alpha
Helix 54	AF9	D	112	118	Right-handed alpha
Helix 55	AG1	D	121	130	Right-handed alpha
Helix 56	AG2	D	151	162	Right-handed alpha
Helix 57	AG3	D	171	182	Right-handed alpha
Helix 58	AG4	D	183	196	Right-handed alpha
Helix 59	AG5	D	200	220	Right-handed alpha
Helix 60	AG6	D	222	225	Right-handed 310
Helix 61	AG7	D	245	247	Right-handed 310
Helix 62	AG8	D	252	275	Right-handed alpha
Helix 63	AG9	D	277	297	Right-handed alpha
Helix 64	AH1	D	315	321	Right-handed alpha
Helix 65	AH2	D	325	330	Right-handed alpha
Helix 66	AH3	D	359	366	Right-handed alpha
Helix 67	AH4	D	366	377	Right-handed alpha
Helix 68	AH5	D	382	392	Right-handed alpha
Helix 69	AH6	D	394	405	Right-handed alpha
Helix 70	AH7	D	419	421	Right-handed 310
Helix 71	AH8	D	439	441	Right-handed 310
Helix 72	AH9	D	442	447	Right-handed alpha
Helix 73	AI1	D	462	473	Right-handed alpha
Helix 74	AI2	D	474	478	Right-handed 310
Helix 75	AI3	D	493	503	Right-handed alpha
Helix 76	AI4	D	518	529	Right-handed alpha
Helix 77	AI5	D	542	545	Right-handed 310
Helix 78	AI6	D	552	555	Right-handed 310
Helix 79	AI7	D	562	570	Right-handed alpha
Helix 80	AI8	D	582	588	Right-handed alpha
Helix 81	AI9	D	591	593	Right-handed 310
Helix 82	AJ1	D	604	613	Right-handed alpha
Helix 83	AJ2	D	620	635	Right-handed alpha
Helix 84	AJ3	D	636	659	Right-handed alpha
Helix 85	AJ4	D	663	667	Right-handed 310
Helix 86	AJ5	D	670	672	Right-handed 310
Helix 87	AJ6	D	673	693	Right-handed alpha
Helix 88	AJ7	D	697	724	Right-handed alpha
Helix 89	AJ8	D	728	736	Right-handed alpha
Helix 90	AJ9	D	741	750	Right-handed alpha
Helix 91	AK1	D	776	812	Right-handed alpha
Helix 92	AK2	D	842	848	Right-handed alpha
Helix 93	AK3	D	873	883	Right-handed alpha
Helix 94	AK4	D	903	908	Right-handed alpha
Helix 95	AK5	D	922	938	Right-handed alpha
Helix 96	AK6	D	955	965	Right-handed alpha
Helix 97	AK7	D	989	991	Right-handed 310
Helix 98	AK8	D	1034	1043	Right-handed alpha
Helix 99	AK9	D	1043	1062	Right-handed alpha
Helix 100	AL1	D	1067	1079	Right-handed alpha
Helix 101	AL2	D	1100	1113	Right-handed alpha
Helix 102	AL3	D	1126	1133	Right-handed alpha
Helix 103	AL4	D	1136	1144	Right-handed alpha
Helix 104	AL5	D	1145	1157	Right-handed alpha
Helix 105	AL6	D	1164	1171	Right-handed alpha
Helix 106	AL7	D	1177	1180	Right-handed 310
Helix 107	AL8	D	1181	1186	Right-handed alpha
Helix 108	AL9	F	5	13	Right-handed alpha
Helix 109	AM1	F	15	33	Right-handed alpha
Helix 110	AM2	F	34	37	Right-handed 310
Helix 111	AM3	F	46	58	Right-handed alpha
Helix 112	AM4	G	17	21	Right-handed 310
Helix 113	AM5	G	30	39	Right-handed alpha
Helix 114	AM6	G	40	42	Right-handed 310
Helix 115	AM7	G	53	63	Right-handed alpha
Helix 116	AM8	E	98	107	Right-handed alpha
Helix 117	AM9	E	113	126	Right-handed alpha
Helix 118	AN1	E	128	151	Right-handed alpha
Helix 119	AN2	E	156	175	Right-handed alpha
Helix 120	AN3	E	182	203	Right-handed alpha
Helix 121	AN4	E	209	231	Right-handed alpha
Helix 122	AN5	E	235	244	Right-handed alpha
Helix 123	AN6	E	246	258	Right-handed alpha
Helix 124	AN7	E	274	278	Right-handed 310
Helix 125	AN8	E	286	305	Right-handed alpha
Helix 126	AN9	E	308	320	Right-handed alpha
Helix 127	AO1	E	328	337	Right-handed alpha
Helix 128	AO2	E	339	356	Right-handed alpha
Helix 129	AO3	E	356	365	Right-handed alpha

There are 45 sheets in PDB entry 8X6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	14	first strand
Strand 2	A	20	28	anti-parallel
Strand 3	A	188	199	anti-parallel
Strand 4	A	175	185	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	101	first strand
Strand 2	A	136	146	anti-parallel
Strand 3	A	49	58	anti-parallel
Strand 4	A	163	165	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	118	120	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	126	130	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	168	169	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	14	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	188	200	anti-parallel
Strand 4	B	173	185	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	101	first strand
Strand 2	B	136	146	anti-parallel
Strand 3	B	49	58	anti-parallel
Strand 4	B	163	165	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	118	120	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	108	first strand
Strand 2	B	126	130	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	168	169	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	12	16	anti-parallel
Strand 3	C	987	988	parallel
Strand 4	C	657	658	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	62	71	anti-parallel
Strand 3	C	89	100	anti-parallel
Strand 4	C	105	117	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	467	469	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	409	first strand
Strand 2	C	136	140	anti-parallel
Strand 3	C	484	486	parallel
Strand 4	C	527	530	anti-parallel
Strand 5	C	513	514	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	150	first strand
Strand 2	C	156	162	anti-parallel
Strand 3	C	170	174	anti-parallel
Strand 4	C	180	184	anti-parallel
Strand 5	C	190	191	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	309	310	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	302	304	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	331	first strand
Strand 2	C	342	350	anti-parallel
Strand 3	C	359	364	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	542	549	anti-parallel
Strand 3	C	556	563	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	542	549	anti-parallel
Strand 3	C	609	611	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	574	first strand
Strand 2	C	590	595	anti-parallel
Strand 3	C	598	603	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	674	first strand
Strand 2	C	740	743	anti-parallel
Strand 3	C	726	727	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	710	first strand
Strand 2	C	688	697	anti-parallel
Strand 3	C	679	685	anti-parallel
Strand 4	C	734	735	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	715	716	first strand
Strand 2	C	722	723	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	747	748	first strand
Strand 2	C	751	752	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	756	762	first strand
Strand 2	C	955	957	parallel
Strand 3	C	773	777	anti-parallel
Strand 4	C	933	939	parallel
Strand 5	C	924	926	anti-parallel
Strand 6	C	1032	1039	anti-parallel
Strand 7	C	756	762	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	799	first strand
Strand 2	C	905	917	anti-parallel
Strand 3	C	884	893	anti-parallel
Strand 4	C	834	835	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	807	808	first strand
Strand 2	C	844	847	anti-parallel
Strand 3	C	871	873	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	840	842	first strand
Strand 2	C	876	877	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1049	1051	first strand
Strand 2	D	339	346	anti-parallel
Strand 3	D	454	458	anti-parallel
Strand 4	D	410	413	anti-parallel
Strand 5	D	423	431	anti-parallel
Strand 6	D	354	358	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1049	1051	first strand
Strand 2	D	339	346	anti-parallel
Strand 3	D	436	438	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1074	1075	first strand
Strand 2	D	334	335	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1143	1145	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1159	1160	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	102	parallel
Strand 3	D	227	233	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	134	138	anti-parallel
Strand 3	D	167	169	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	243	first strand
Strand 2	D	249	251	anti-parallel
Strand 3	E	261	262	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	536	540	parallel
Strand 3	D	557	561	anti-parallel
Strand 4	D	595	596	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	816	817	first strand
Strand 2	D	901	902	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	828	830	first strand
Strand 2	D	888	890	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	833	835	first strand
Strand 2	D	838	841	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	856	857	first strand
Strand 2	D	864	866	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1003	1008	first strand
Strand 2	D	993	999	anti-parallel
Strand 3	D	980	987	anti-parallel
Strand 4	D	1021	1022	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1097	1099	first strand
Strand 2	D	1081	1086	anti-parallel
Strand 3	D	1119	1123	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1189	1191	first strand
Strand 2	F	60	62	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	50	first strand
Strand 2	G	4	9	anti-parallel
Strand 3	G	22	27	anti-parallel
Strand 4	G	68	70	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X6F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X6F