Analysis of interatomic Contacts of Structural Units in PDB entry:
8X6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X6V entry

There are 2 chains in PDB entry 8X6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25ARG 285
B
 ALA 26ARG 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8X6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 80Right-handed 310
Helix 2
AA2
A
81 91Right-handed alpha
Helix 3
AA3
A
106 127Right-handed alpha
Helix 4
AA4
A
147 161Right-handed alpha
Helix 5
AA5
A
162 164Right-handed 310
Helix 6
AA6
A
180 184Right-handed 310
Helix 7
AA7
A
200 211Right-handed alpha
Helix 8
AA8
A
226 231Right-handed 310
Helix 9
AA9
A
235 254Right-handed alpha
Helix 10
AB1
A
257 260Right-handed 310
Helix 11
AB2
A
261 266Right-handed alpha
Helix 12
AB3
A
266 275Right-handed alpha
Helix 13
AB4
B
77 80Right-handed 310
Helix 14
AB5
B
81 91Right-handed alpha
Helix 15
AB6
B
106 127Right-handed alpha
Helix 16
AB7
B
147 161Right-handed alpha
Helix 17
AB8
B
162 164Right-handed 310
Helix 18
AB9
B
180 184Right-handed 310
Helix 19
AC1
B
200 209Right-handed alpha
Helix 20
AC2
B
226 231Right-handed 310
Helix 21
AC3
B
235 254Right-handed alpha
Helix 22
AC4
B
257 260Right-handed 310
Helix 23
AC5
B
261 266Right-handed alpha
Helix 24
AC6
B
266 275Right-handed alpha
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There are 2 sheets in PDB entry 8X6V. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
94 100anti-parallel
Strand 4
A
65 71parallel
Strand 5
A
136 146parallel
Strand 6
A
166 170parallel
Strand 7
A
187 193parallel
Strand 8
A
217 222parallel
Strand 9
A
278 284anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
49 57anti-parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
65 71parallel
Strand 5
B
136 146parallel
Strand 6
B
166 170parallel
Strand 7
B
187 193parallel
Strand 8
B
217 222parallel
Strand 9
B
278 284anti-parallel
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