Analysis of interatomic Contacts of Structural Units in PDB entry:
8X70

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X70 entry

There are 4 chains in PDB entry 8X70 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 196	LYS 389
B	LYS 202	LYS 389
C	ASN 198	THR 392
D	ASN 198	LYS 391

There are 17 helices in PDB entry 8X70. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	246	254	Right-handed 310
Helix 2	AA2	A	291	299	Right-handed alpha
Helix 3	AA3	A	303	309	Right-handed alpha
Helix 4	AA4	A	348	352	Right-handed 310
Helix 5	AA5	B	246	254	Right-handed 310
Helix 6	AA6	B	283	287	Right-handed 310
Helix 7	AA7	B	291	300	Right-handed alpha
Helix 8	AA8	B	303	308	Right-handed alpha
Helix 9	AA9	B	348	352	Right-handed 310
Helix 10	AB1	C	246	254	Right-handed 310
Helix 11	AB2	C	291	299	Right-handed alpha
Helix 12	AB3	C	303	308	Right-handed alpha
Helix 13	AB4	C	350	352	Right-handed 310
Helix 14	AB5	D	246	254	Right-handed 310
Helix 15	AB6	D	291	298	Right-handed alpha
Helix 16	AB7	D	303	308	Right-handed alpha
Helix 17	AB8	D	350	352	Right-handed 310

There are 12 sheets in PDB entry 8X70. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	225	234	anti-parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	270	273	parallel
Strand 5	A	265	267	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	225	234	anti-parallel
Strand 3	A	205	212	anti-parallel
Strand 4	A	259	262	anti-parallel
Strand 5	A	278	281	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	389	first strand
Strand 2	A	361	372	anti-parallel
Strand 3	A	375	379	anti-parallel
Strand 4	A	341	347	parallel
Strand 5	A	332	338	anti-parallel
Strand 6	A	315	327	anti-parallel
Strand 7	A	361	372	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	219	first strand
Strand 2	B	225	234	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	270	273	parallel
Strand 5	B	265	267	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	219	first strand
Strand 2	B	225	234	anti-parallel
Strand 3	B	205	212	anti-parallel
Strand 4	B	259	262	anti-parallel
Strand 5	B	278	281	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	361	372	anti-parallel
Strand 3	B	375	379	anti-parallel
Strand 4	B	341	347	parallel
Strand 5	B	332	338	anti-parallel
Strand 6	B	315	326	anti-parallel
Strand 7	B	361	372	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	201	first strand
Strand 2	C	264	267	anti-parallel
Strand 3	C	270	273	anti-parallel
Strand 4	C	239	244	parallel
Strand 5	C	225	234	anti-parallel
Strand 6	C	216	219	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	201	first strand
Strand 2	C	264	267	anti-parallel
Strand 3	C	270	273	anti-parallel
Strand 4	C	239	244	parallel
Strand 5	C	225	234	anti-parallel
Strand 6	C	205	212	anti-parallel
Strand 7	C	258	262	anti-parallel
Strand 8	C	278	281	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	389	first strand
Strand 2	C	361	372	anti-parallel
Strand 3	C	375	379	anti-parallel
Strand 4	C	341	348	parallel
Strand 5	C	331	338	anti-parallel
Strand 6	C	315	327	anti-parallel
Strand 7	C	361	372	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	264	267	anti-parallel
Strand 3	D	270	273	anti-parallel
Strand 4	D	239	244	parallel
Strand 5	D	225	234	anti-parallel
Strand 6	D	216	219	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	264	267	anti-parallel
Strand 3	D	270	273	anti-parallel
Strand 4	D	239	244	parallel
Strand 5	D	225	234	anti-parallel
Strand 6	D	205	212	anti-parallel
Strand 7	D	259	262	anti-parallel
Strand 8	D	278	281	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	388	first strand
Strand 2	D	361	370	anti-parallel
Strand 3	D	377	379	anti-parallel
Strand 4	D	341	348	parallel
Strand 5	D	331	338	anti-parallel
Strand 6	D	315	327	anti-parallel
Strand 7	D	361	370	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X70

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X70