Analysis of interatomic Contacts of Structural Units in PDB entry:
8X7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X7F entry

There are 4 chains in PDB entry 8X7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 64	ARG 410
D	LYS 64	ARG 410
G	LYS 64	ARG 410
J	LYS 64	ARG 410

There are 64 helices in PDB entry 8X7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	89	Right-handed alpha
Helix 2	AA2	A	101	112	Right-handed alpha
Helix 3	AA3	A	119	131	Right-handed alpha
Helix 4	AA4	A	155	169	Right-handed alpha
Helix 5	AA5	A	182	191	Right-handed alpha
Helix 6	AA6	A	207	214	Right-handed alpha
Helix 7	AA7	A	218	222	Right-handed 310
Helix 8	AA8	A	226	230	Right-handed 310
Helix 9	AA9	A	243	255	Right-handed alpha
Helix 10	AB1	A	262	273	Right-handed alpha
Helix 11	AB2	A	280	282	Right-handed 310
Helix 12	AB3	A	283	301	Right-handed alpha
Helix 13	AB4	A	311	324	Right-handed alpha
Helix 14	AB5	A	327	337	Right-handed alpha
Helix 15	AB6	A	361	379	Right-handed alpha
Helix 16	AB7	A	390	407	Right-handed alpha
Helix 17	AB8	D	77	89	Right-handed alpha
Helix 18	AB9	D	101	112	Right-handed alpha
Helix 19	AC1	D	119	131	Right-handed alpha
Helix 20	AC2	D	155	169	Right-handed alpha
Helix 21	AC3	D	181	191	Right-handed alpha
Helix 22	AC4	D	207	214	Right-handed alpha
Helix 23	AC5	D	218	222	Right-handed 310
Helix 24	AC6	D	226	230	Right-handed 310
Helix 25	AC7	D	243	255	Right-handed alpha
Helix 26	AC8	D	262	273	Right-handed alpha
Helix 27	AC9	D	280	282	Right-handed 310
Helix 28	AD1	D	283	301	Right-handed alpha
Helix 29	AD2	D	311	324	Right-handed alpha
Helix 30	AD3	D	327	337	Right-handed alpha
Helix 31	AD4	D	361	379	Right-handed alpha
Helix 32	AD5	D	390	407	Right-handed alpha
Helix 33	AD6	G	77	89	Right-handed alpha
Helix 34	AD7	G	101	112	Right-handed alpha
Helix 35	AD8	G	119	131	Right-handed alpha
Helix 36	AD9	G	155	169	Right-handed alpha
Helix 37	AE1	G	181	191	Right-handed alpha
Helix 38	AE2	G	207	214	Right-handed alpha
Helix 39	AE3	G	218	222	Right-handed 310
Helix 40	AE4	G	226	230	Right-handed 310
Helix 41	AE5	G	243	255	Right-handed alpha
Helix 42	AE6	G	262	273	Right-handed alpha
Helix 43	AE7	G	282	301	Right-handed alpha
Helix 44	AE8	G	311	324	Right-handed alpha
Helix 45	AE9	G	327	337	Right-handed alpha
Helix 46	AF1	G	361	379	Right-handed alpha
Helix 47	AF2	G	390	407	Right-handed alpha
Helix 48	AF3	J	77	89	Right-handed alpha
Helix 49	AF4	J	101	112	Right-handed alpha
Helix 50	AF5	J	119	131	Right-handed alpha
Helix 51	AF6	J	155	169	Right-handed alpha
Helix 52	AF7	J	181	190	Right-handed alpha
Helix 53	AF8	J	207	214	Right-handed alpha
Helix 54	AF9	J	218	222	Right-handed 310
Helix 55	AG1	J	226	230	Right-handed 310
Helix 56	AG2	J	243	255	Right-handed alpha
Helix 57	AG3	J	262	273	Right-handed alpha
Helix 58	AG4	J	275	279	Right-handed 310
Helix 59	AG5	J	280	282	Right-handed 310
Helix 60	AG6	J	283	301	Right-handed alpha
Helix 61	AG7	J	311	324	Right-handed alpha
Helix 62	AG8	J	327	337	Right-handed alpha
Helix 63	AG9	J	361	379	Right-handed alpha
Helix 64	AH1	J	390	407	Right-handed alpha

There are 8 sheets in PDB entry 8X7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	143	first strand
Strand 2	A	93	100	parallel
Strand 3	A	66	70	parallel
Strand 4	A	174	177	parallel
Strand 5	A	194	196	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	305	308	parallel
Strand 3	A	232	237	parallel
Strand 4	A	341	344	parallel
Strand 5	A	384	385	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	143	first strand
Strand 2	D	93	100	parallel
Strand 3	D	66	70	parallel
Strand 4	D	174	177	parallel
Strand 5	D	194	196	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	305	308	parallel
Strand 3	D	232	237	parallel
Strand 4	D	341	345	parallel
Strand 5	D	384	386	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	143	first strand
Strand 2	G	93	100	parallel
Strand 3	G	66	70	parallel
Strand 4	G	174	177	parallel
Strand 5	G	194	196	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	260	first strand
Strand 2	G	305	308	parallel
Strand 3	G	232	237	parallel
Strand 4	G	341	345	parallel
Strand 5	G	384	386	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	137	143	first strand
Strand 2	J	93	100	parallel
Strand 3	J	66	70	parallel
Strand 4	J	174	177	parallel
Strand 5	J	194	196	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	259	260	first strand
Strand 2	J	305	308	parallel
Strand 3	J	232	237	parallel
Strand 4	J	341	345	parallel
Strand 5	J	384	386	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X7F