Analysis of interatomic Contacts of Structural Units in PDB entry:
8X88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X88 entry

There are 2 chains in PDB entry 8X88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 21LYS 317
B
 ALA 23LYS 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8X88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 81Right-handed alpha
Helix 2
AA2
A
82 84Right-handed 310
Helix 3
AA3
A
118 125Right-handed alpha
Helix 4
AA4
A
132 153Right-handed alpha
Helix 5
AA5
A
161 163Right-handed 310
Helix 6
AA6
A
179 188Right-handed alpha
Helix 7
AA7
A
202 208Right-handed alpha
Helix 8
AA8
A
215 218Right-handed 310
Helix 9
AA9
A
219 235Right-handed alpha
Helix 10
AB1
A
243 251Right-handed alpha
Helix 11
AB2
A
265 276Right-handed alpha
Helix 12
AB3
A
285 291Right-handed alpha
Helix 13
AB4
A
300 315Right-handed alpha
Helix 14
AB5
B
68 80Right-handed alpha
Helix 15
AB6
B
81 85Right-handed 310
Helix 16
AB7
B
118 126Right-handed alpha
Helix 17
AB8
B
132 153Right-handed alpha
Helix 18
AB9
B
179 186Right-handed alpha
Helix 19
AC1
B
197 201Right-handed 310
Helix 20
AC2
B
202 208Right-handed alpha
Helix 21
AC3
B
215 218Right-handed 310
Helix 22
AC4
B
219 234Right-handed alpha
Helix 23
AC5
B
243 251Right-handed alpha
Helix 24
AC6
B
265 276Right-handed alpha
Helix 25
AC7
B
285 292Right-handed alpha
Helix 26
AC8
B
292 297Right-handed alpha
Helix 27
AC9
B
300 317Right-handed alpha
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There are 4 sheets in PDB entry 8X88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 39first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
56 64anti-parallel
Strand 4
A
105 111anti-parallel
Strand 5
A
91 97anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
173 175anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
56 64anti-parallel
Strand 4
B
105 112anti-parallel
Strand 5
B
91 97anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
173 175anti-parallel
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