Analysis of interatomic Contacts of Structural Units in PDB entry:
8X8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X8J entry

There are 2 chains in PDB entry 8X8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LYS 249
B
 ASN 6MET 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8X8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 41Right-handed alpha
Helix 2
AA2
A
56 66Right-handed alpha
Helix 3
AA3
A
77 84Right-handed 310
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
120 131Right-handed alpha
Helix 6
AA6
A
148 156Right-handed alpha
Helix 7
AA7
A
163 175Right-handed alpha
Helix 8
AA8
A
192 204Right-handed alpha
Helix 9
AA9
A
217 225Right-handed alpha
Helix 10
AB1
A
226 229Right-handed 310
Helix 11
AB2
B
24 41Right-handed alpha
Helix 12
AB3
B
56 66Right-handed alpha
Helix 13
AB4
B
77 84Right-handed 310
Helix 14
AB5
B
114 118Right-handed 310
Helix 15
AB6
B
120 131Right-handed alpha
Helix 16
AB7
B
148 156Right-handed alpha
Helix 17
AB8
B
163 174Right-handed alpha
Helix 18
AB9
B
192 203Right-handed alpha
Helix 19
AC1
B
214 225Right-handed alpha
Helix 20
AC2
B
226 229Right-handed 310
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There are 2 sheets in PDB entry 8X8J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
70 75parallel
Strand 3
A
47 50parallel
Strand 4
A
106 112parallel
Strand 5
A
132 143parallel
Strand 6
A
240 247anti-parallel
Strand 7
A
176 190anti-parallel
Strand 8
B
7 21anti-parallel
Strand 9
A
7 21anti-parallel
Strand 10
B
176 190anti-parallel
Strand 11
B
240 247anti-parallel
Strand 12
B
132 143anti-parallel
Strand 13
B
106 112parallel
Strand 14
B
44 50parallel
Strand 15
B
67 75parallel
Strand 16
B
90 94parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
176 190anti-parallel
Strand 3
B
7 21anti-parallel
Strand 4
A
7 21anti-parallel
Strand 5
B
176 190anti-parallel
Strand 6
B
234 238anti-parallel
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