Analysis of interatomic Contacts of Structural Units in PDB entry:
8X8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X8L entry

There are 6 chains in PDB entry 8X8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	PHE 361
B	GLN 11	ASN 345
C	CYS 5	CYS 16
E	VAL 2	LEU 245
G	SER 7	ARG 61
R	LEU 42	LYS 317

There are 30 helices in PDB entry 8X8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	41	44	Right-handed 310
Helix 3	AA3	A	45	51	Right-handed alpha
Helix 4	AA4	A	210	216	Right-handed 310
Helix 5	AA5	A	229	245	Right-handed alpha
Helix 6	AA6	A	246	250	Right-handed 310
Helix 7	AA7	A	260	271	Right-handed alpha
Helix 8	AA8	A	274	278	Right-handed 310
Helix 9	AA9	A	279	285	Right-handed 310
Helix 10	AB1	A	298	319	Right-handed alpha
Helix 11	AB2	A	337	358	Right-handed alpha
Helix 12	AB3	B	12	30	Right-handed alpha
Helix 13	AB4	B	34	40	Right-handed alpha
Helix 14	AB5	E	28	32	Right-handed 310
Helix 15	AB6	E	62	65	Right-handed 310
Helix 16	AB7	E	87	91	Right-handed 310
Helix 17	AB8	E	220	224	Right-handed 310
Helix 18	AB9	G	8	23	Right-handed alpha
Helix 19	AC1	G	28	43	Right-handed alpha
Helix 20	AC2	R	43	67	Right-handed alpha
Helix 21	AC3	R	73	91	Right-handed alpha
Helix 22	AC4	R	92	102	Right-handed alpha
Helix 23	AC5	R	107	143	Right-handed alpha
Helix 24	AC6	R	152	178	Right-handed alpha
Helix 25	AC7	R	180	184	Right-handed 310
Helix 26	AC8	R	193	210	Right-handed alpha
Helix 27	AC9	R	210	235	Right-handed alpha
Helix 28	AD1	R	241	274	Right-handed alpha
Helix 29	AD2	R	282	304	Right-handed alpha
Helix 30	AD3	R	308	316	Right-handed alpha

There are 14 sheets in PDB entry 8X8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	191	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	254	259	parallel
Strand 6	A	326	330	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	57	first strand
Strand 2	B	340	345	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	94	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	127	130	anti-parallel
Strand 4	B	139	142	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	180	185	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	223	227	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	309	313	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	13	15	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	155	161	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	203	207	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	195	first strand
Strand 2	E	185	190	anti-parallel
Strand 3	E	174	179	anti-parallel
Strand 4	E	225	231	anti-parallel
Strand 5	E	238	239	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	195	first strand
Strand 2	E	185	190	anti-parallel
Strand 3	E	174	179	anti-parallel
Strand 4	E	225	231	anti-parallel
Strand 5	E	243	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X8L