Analysis of interatomic Contacts of Structural Units in PDB entry:
8X8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X8P entry

There are 2 chains in PDB entry 8X8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5GLN 460
B
 LYS 11GLN 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8X8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 40Right-handed alpha
Helix 2
AA2
A
49 57Right-handed alpha
Helix 3
AA3
A
58 60Right-handed 310
Helix 4
AA4
A
85 89Right-handed 310
Helix 5
AA5
A
90 92Right-handed 310
Helix 6
AA6
A
93 103Right-handed alpha
Helix 7
AA7
A
104 116Right-handed alpha
Helix 8
AA8
A
127 136Right-handed alpha
Helix 9
AA9
A
146 153Right-handed alpha
Helix 10
AB1
A
167 173Right-handed alpha
Helix 11
AB2
A
186 198Right-handed 310
Helix 12
AB3
A
204 216Right-handed alpha
Helix 13
AB4
A
224 240Right-handed alpha
Helix 14
AB5
A
259 268Right-handed alpha
Helix 15
AB6
A
286 301Right-handed alpha
Helix 16
AB7
A
316 321Right-handed alpha
Helix 17
AB8
A
324 330Right-handed alpha
Helix 18
AB9
A
341 347Right-handed alpha
Helix 19
AC1
A
359 368Right-handed alpha
Helix 20
AC2
A
379 391Right-handed alpha
Helix 21
AC3
A
402 406Right-handed 310
Helix 22
AC4
A
408 421Right-handed alpha
Helix 23
AC5
A
424 443Right-handed alpha
Helix 24
AC6
A
445 459Right-handed alpha
Helix 25
AC7
B
23 40Right-handed alpha
Helix 26
AC8
B
49 57Right-handed alpha
Helix 27
AC9
B
58 60Right-handed 310
Helix 28
AD1
B
85 89Right-handed 310
Helix 29
AD2
B
90 92Right-handed 310
Helix 30
AD3
B
93 103Right-handed alpha
Helix 31
AD4
B
104 116Right-handed alpha
Helix 32
AD5
B
127 136Right-handed alpha
Helix 33
AD6
B
146 153Right-handed alpha
Helix 34
AD7
B
186 197Right-handed 310
Helix 35
AD8
B
205 216Right-handed alpha
Helix 36
AD9
B
224 240Right-handed alpha
Helix 37
AE1
B
259 268Right-handed alpha
Helix 38
AE2
B
286 301Right-handed alpha
Helix 39
AE3
B
316 321Right-handed alpha
Helix 40
AE4
B
324 330Right-handed alpha
Helix 41
AE5
B
341 347Right-handed alpha
Helix 42
AE6
B
359 368Right-handed alpha
Helix 43
AE7
B
379 391Right-handed alpha
Helix 44
AE8
B
402 406Right-handed 310
Helix 45
AE9
B
408 421Right-handed alpha
Helix 46
AF1
B
424 443Right-handed alpha
Helix 47
AF2
B
445 459Right-handed alpha
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There are 5 sheets in PDB entry 8X8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
43 48parallel
Strand 3
A
15 19parallel
Strand 4
A
119 122parallel
Strand 5
A
138 143parallel
Strand 6
A
218 221parallel
Strand 7
A
243 245parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 336first strand
Strand 2
A
304 307parallel
Strand 3
A
274 277parallel
Strand 4
A
351 356parallel
Strand 5
A
372 375parallel
Strand 6
A
397 398parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
43 48parallel
Strand 3
B
15 19parallel
Strand 4
B
119 122parallel
Strand 5
B
138 143parallel
Strand 6
B
218 221parallel
Strand 7
B
243 245parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
203 204anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 336first strand
Strand 2
B
304 307parallel
Strand 3
B
274 278parallel
Strand 4
B
351 356parallel
Strand 5
B
372 375parallel
Strand 6
B
397 398parallel
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