Analysis of interatomic Contacts of Structural Units in PDB entry:
8X8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X8X entry

There are 2 chains in PDB entry 8X8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 32ARG 417
B
 LYS 29ARG 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8X8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 58Right-handed alpha
Helix 2
AA2
A
61 64Right-handed 310
Helix 3
AA3
A
65 86Right-handed alpha
Helix 4
AA4
A
88 90Right-handed 310
Helix 5
AA5
A
125 131Right-handed alpha
Helix 6
AA6
A
136 147Right-handed alpha
Helix 7
AA7
A
177 184Right-handed alpha
Helix 8
AA8
A
187 208Right-handed alpha
Helix 9
AA9
A
216 218Right-handed 310
Helix 10
AB1
A
253 257Right-handed 310
Helix 11
AB2
A
258 264Right-handed alpha
Helix 12
AB3
A
265 267Right-handed 310
Helix 13
AB4
A
273 290Right-handed alpha
Helix 14
AB5
A
298 308Right-handed alpha
Helix 15
AB6
A
308 313Right-handed alpha
Helix 16
AB7
A
322 333Right-handed alpha
Helix 17
AB8
A
345 350Right-handed alpha
Helix 18
AB9
A
351 355Right-handed 310
Helix 19
AC1
A
363 367Right-handed 310
Helix 20
AC2
A
407 411Right-handed 310
Helix 21
AC3
B
30 36Right-handed alpha
Helix 22
AC4
B
42 58Right-handed alpha
Helix 23
AC5
B
61 64Right-handed 310
Helix 24
AC6
B
65 85Right-handed alpha
Helix 25
AC7
B
88 90Right-handed 310
Helix 26
AC8
B
125 131Right-handed alpha
Helix 27
AC9
B
137 147Right-handed alpha
Helix 28
AD1
B
176 182Right-handed alpha
Helix 29
AD2
B
187 208Right-handed alpha
Helix 30
AD3
B
216 218Right-handed 310
Helix 31
AD4
B
258 266Right-handed alpha
Helix 32
AD5
B
274 290Right-handed alpha
Helix 33
AD6
B
298 308Right-handed alpha
Helix 34
AD7
B
308 313Right-handed alpha
Helix 35
AD8
B
322 333Right-handed alpha
Helix 36
AD9
B
335 339Right-handed 310
Helix 37
AE1
B
345 350Right-handed alpha
Helix 38
AE2
B
351 355Right-handed 310
Helix 39
AE3
B
363 367Right-handed 310
Helix 40
AE4
B
407 411Right-handed 310
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There are 7 sheets in PDB entry 8X8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 100first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
117 124anti-parallel
Strand 4
A
164 169anti-parallel
Strand 5
A
155 160anti-parallel
Strand 6
A
415 416anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
220 222anti-parallel
Strand 3
A
228 230anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
237 238anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
269 272anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 101first strand
Strand 2
B
104 111anti-parallel
Strand 3
B
117 124anti-parallel
Strand 4
B
164 169anti-parallel
Strand 5
B
155 160anti-parallel
Strand 6
B
415 416anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
237 238anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
228 230anti-parallel
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