Analysis of interatomic Contacts of Structural Units in PDB entry:
8X92


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8X92 entry

There are 2 chains in PDB entry 8X92 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 29TYR 416
B
 LYS 29ARG 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8X92. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 36Right-handed alpha
Helix 2
AA2
A
42 58Right-handed alpha
Helix 3
AA3
A
61 64Right-handed 310
Helix 4
AA4
A
65 86Right-handed alpha
Helix 5
AA5
A
88 90Right-handed 310
Helix 6
AA6
A
125 131Right-handed alpha
Helix 7
AA7
A
136 147Right-handed alpha
Helix 8
AA8
A
176 184Right-handed alpha
Helix 9
AA9
A
187 208Right-handed alpha
Helix 10
AB1
A
216 218Right-handed 310
Helix 11
AB2
A
253 257Right-handed 310
Helix 12
AB3
A
258 264Right-handed alpha
Helix 13
AB4
A
273 290Right-handed alpha
Helix 14
AB5
A
298 308Right-handed alpha
Helix 15
AB6
A
308 313Right-handed alpha
Helix 16
AB7
A
322 333Right-handed alpha
Helix 17
AB8
A
335 339Right-handed 310
Helix 18
AB9
A
345 350Right-handed alpha
Helix 19
AC1
A
351 355Right-handed 310
Helix 20
AC2
A
363 367Right-handed 310
Helix 21
AC3
A
407 411Right-handed 310
Helix 22
AC4
B
30 36Right-handed alpha
Helix 23
AC5
B
42 56Right-handed alpha
Helix 24
AC6
B
61 64Right-handed 310
Helix 25
AC7
B
65 86Right-handed alpha
Helix 26
AC8
B
88 90Right-handed 310
Helix 27
AC9
B
125 130Right-handed alpha
Helix 28
AD1
B
137 147Right-handed alpha
Helix 29
AD2
B
176 184Right-handed alpha
Helix 30
AD3
B
187 208Right-handed alpha
Helix 31
AD4
B
216 218Right-handed 310
Helix 32
AD5
B
258 265Right-handed alpha
Helix 33
AD6
B
274 290Right-handed alpha
Helix 34
AD7
B
298 308Right-handed alpha
Helix 35
AD8
B
308 313Right-handed alpha
Helix 36
AD9
B
322 333Right-handed alpha
Helix 37
AE1
B
335 339Right-handed 310
Helix 38
AE2
B
345 350Right-handed alpha
Helix 39
AE3
B
351 355Right-handed 310
Helix 40
AE4
B
363 367Right-handed 310
Helix 41
AE5
B
407 411Right-handed 310
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There are 7 sheets in PDB entry 8X92. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 101first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
117 124anti-parallel
Strand 4
A
164 169anti-parallel
Strand 5
A
155 160anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
237 238anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
228 230anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
269 272anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 100first strand
Strand 2
B
104 111anti-parallel
Strand 3
B
117 124anti-parallel
Strand 4
B
164 169anti-parallel
Strand 5
B
155 160anti-parallel
Strand 6
B
415 416anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
237 238anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
228 230anti-parallel
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