Analysis of interatomic Contacts of Structural Units in PDB entry:
8X93

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8X93 entry

There are 3 chains in PDB entry 8X93 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 38	HIS 361
B	PRO 26	GLY 1076
A	VAL 86	ARG 1982

There are110 helices in PDB entry 8X93. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	38	55	Right-handed alpha
Helix 2	AA2	C	120	132	Right-handed alpha
Helix 3	AA3	C	155	159	Right-handed 310
Helix 4	AA4	C	190	208	Right-handed alpha
Helix 5	AA5	C	246	263	Right-handed alpha
Helix 6	AA6	C	276	281	Right-handed 310
Helix 7	AA7	C	296	306	Right-handed alpha
Helix 8	AA8	C	309	314	Right-handed alpha
Helix 9	AA9	C	314	327	Right-handed alpha
Helix 10	AB1	C	329	333	Right-handed 310
Helix 11	AB2	C	341	360	Right-handed alpha
Helix 12	AB3	B	29	52	Right-handed alpha
Helix 13	AB4	B	54	64	Right-handed alpha
Helix 14	AB5	B	74	110	Right-handed alpha
Helix 15	AB6	B	176	186	Right-handed alpha
Helix 16	AB7	B	188	200	Right-handed alpha
Helix 17	AB8	B	237	240	Right-handed 310
Helix 18	AB9	B	241	249	Right-handed alpha
Helix 19	AC1	B	261	265	Right-handed 310
Helix 20	AC2	B	266	282	Right-handed alpha
Helix 21	AC3	B	313	323	Right-handed alpha
Helix 22	AC4	B	332	344	Right-handed alpha
Helix 23	AC5	B	369	377	Right-handed alpha
Helix 24	AC6	B	396	406	Right-handed alpha
Helix 25	AC7	B	415	417	Right-handed 310
Helix 26	AC8	B	418	425	Right-handed alpha
Helix 27	AC9	B	425	431	Right-handed alpha
Helix 28	AD1	B	431	436	Right-handed alpha
Helix 29	AD2	B	494	500	Right-handed alpha
Helix 30	AD3	B	560	565	Right-handed alpha
Helix 31	AD4	B	568	581	Right-handed alpha
Helix 32	AD5	B	637	646	Right-handed alpha
Helix 33	AD6	B	649	653	Right-handed 310
Helix 34	AD7	B	675	689	Right-handed alpha
Helix 35	AD8	B	698	721	Right-handed alpha
Helix 36	AD9	B	745	752	Right-handed 310
Helix 37	AE1	B	757	760	Right-handed 310
Helix 38	AE2	B	761	769	Right-handed alpha
Helix 39	AE3	B	817	826	Right-handed alpha
Helix 40	AE4	B	864	869	Right-handed alpha
Helix 41	AE5	B	874	878	Right-handed 310
Helix 42	AE6	B	881	889	Right-handed alpha
Helix 43	AE7	B	1042	1049	Right-handed alpha
Helix 44	AE8	A	97	117	Right-handed alpha
Helix 45	AE9	A	127	135	Right-handed alpha
Helix 46	AF1	A	136	156	Right-handed alpha
Helix 47	AF2	A	157	157	Right-handed 310
Helix 48	AF3	A	163	166	Right-handed 310
Helix 49	AF4	A	167	185	Right-handed alpha
Helix 50	AF5	A	192	202	Right-handed 310
Helix 51	AF6	A	203	209	Right-handed alpha
Helix 52	AF7	A	209	223	Right-handed alpha
Helix 53	AF8	A	225	249	Right-handed alpha
Helix 54	AF9	A	250	254	Right-handed 310
Helix 55	AG1	A	293	298	Right-handed 310
Helix 56	AG2	A	303	316	Right-handed alpha
Helix 57	AG3	A	319	332	Right-handed alpha
Helix 58	AG4	A	336	348	Right-handed alpha
Helix 59	AG5	A	348	368	Right-handed alpha
Helix 60	AG6	A	369	404	Right-handed alpha
Helix 61	AG7	A	469	485	Right-handed alpha
Helix 62	AG8	A	485	506	Right-handed alpha
Helix 63	AG9	A	511	541	Right-handed alpha
Helix 64	AH1	A	541	548	Right-handed alpha
Helix 65	AH2	A	548	571	Right-handed alpha
Helix 66	AH3	A	577	592	Right-handed 310
Helix 67	AH4	A	593	594	Right-handed 310
Helix 68	AH5	A	595	609	Right-handed alpha
Helix 69	AH6	A	609	635	Right-handed alpha
Helix 70	AH7	A	652	666	Right-handed alpha
Helix 71	AH8	A	668	680	Right-handed alpha
Helix 72	AH9	A	686	688	Right-handed 310
Helix 73	AI1	A	689	745	Right-handed alpha
Helix 74	AI2	A	772	789	Right-handed alpha
Helix 75	AI3	A	1231	1242	Right-handed alpha
Helix 76	AI4	A	1242	1263	Right-handed alpha
Helix 77	AI5	A	1270	1298	Right-handed alpha
Helix 78	AI6	A	1306	1309	Right-handed 310
Helix 79	AI7	A	1310	1333	Right-handed alpha
Helix 80	AI8	A	1337	1346	Right-handed alpha
Helix 81	AI9	A	1347	1352	Right-handed 310
Helix 82	AJ1	A	1353	1359	Right-handed alpha
Helix 83	AJ2	A	1359	1376	Right-handed alpha
Helix 84	AJ3	A	1376	1399	Right-handed alpha
Helix 85	AJ4	A	1444	1457	Right-handed alpha
Helix 86	AJ5	A	1460	1471	Right-handed alpha
Helix 87	AJ6	A	1483	1485	Right-handed 310
Helix 88	AJ7	A	1486	1497	Right-handed alpha
Helix 89	AJ8	A	1500	1513	Right-handed alpha
Helix 90	AJ9	A	1529	1539	Right-handed alpha
Helix 91	AK1	A	1554	1564	Right-handed alpha
Helix 92	AK2	A	1564	1584	Right-handed alpha
Helix 93	AK3	A	1590	1620	Right-handed alpha
Helix 94	AK4	A	1620	1625	Right-handed alpha
Helix 95	AK5	A	1627	1649	Right-handed alpha
Helix 96	AK6	A	1660	1665	Right-handed alpha
Helix 97	AK7	A	1666	1673	Right-handed 310
Helix 98	AK8	A	1674	1690	Right-handed alpha
Helix 99	AK9	A	1691	1714	Right-handed alpha
Helix 100	AL1	A	1740	1754	Right-handed alpha
Helix 101	AL2	A	1756	1764	Right-handed alpha
Helix 102	AL3	A	1785	1812	Right-handed alpha
Helix 103	AL4	A	1812	1817	Right-handed alpha
Helix 104	AL5	A	1824	1839	Right-handed alpha
Helix 105	AL6	A	1848	1858	Right-handed alpha
Helix 106	AL7	A	1869	1881	Right-handed alpha
Helix 107	AL8	A	1892	1905	Right-handed alpha
Helix 108	AL9	A	1912	1930	Right-handed alpha
Helix 109	AM1	A	1934	1942	Right-handed alpha
Helix 110	AM2	A	1951	1982	Right-handed alpha

There are 16 sheets in PDB entry 8X93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	103	108	anti-parallel
Strand 3	C	92	95	anti-parallel
Strand 4	C	62	66	anti-parallel
Strand 5	C	171	174	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	215	first strand
Strand 2	C	266	269	parallel
Strand 3	C	180	183	parallel
Strand 4	C	288	292	parallel
Strand 5	C	335	337	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	629	633	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	122	126	parallel
Strand 3	B	165	167	parallel
Strand 4	B	215	217	anti-parallel
Strand 5	B	205	210	anti-parallel
Strand 6	B	486	493	anti-parallel
Strand 7	B	458	466	anti-parallel
Strand 8	B	445	446	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	122	126	parallel
Strand 3	B	165	167	parallel
Strand 4	B	215	217	anti-parallel
Strand 5	B	205	210	anti-parallel
Strand 6	B	486	493	anti-parallel
Strand 7	B	458	466	anti-parallel
Strand 8	B	450	451	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	288	294	anti-parallel
Strand 3	B	308	309	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	288	294	anti-parallel
Strand 3	B	253	259	parallel
Strand 4	B	356	362	parallel
Strand 5	B	383	389	parallel
Strand 6	B	410	413	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	523	first strand
Strand 2	B	511	515	anti-parallel
Strand 3	B	618	624	anti-parallel
Strand 4	B	604	611	anti-parallel
Strand 5	B	584	589	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	593	first strand
Strand 2	B	600	601	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	660	first strand
Strand 2	B	741	743	anti-parallel
Strand 3	B	729	736	anti-parallel
Strand 4	B	805	816	anti-parallel
Strand 5	B	792	802	anti-parallel
Strand 6	B	774	776	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	862	first strand
Strand 2	B	849	854	anti-parallel
Strand 3	B	1013	1018	anti-parallel
Strand 4	B	999	1008	anti-parallel
Strand 5	B	990	996	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	893	899	first strand
Strand 2	B	976	982	anti-parallel
Strand 3	B	1036	1037	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	285	288	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1403	1405	first strand
Strand 2	A	1435	1437	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1419	1424	first strand
Strand 2	A	1427	1432	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1845	1847	first strand
Strand 2	A	1889	1891	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8X93

Analysis of interatomic Contacts of Structural Units in PDB entry:
8X93