Analysis of interatomic Contacts of Structural Units in PDB entry:
8XA6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XA6 entry

There are 8 chains in PDB entry 8XA6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	THR 228
B	GLU 5	THR 228
C	THR 2	GLU 1153
D	VAL 4	VAL 1186
F	MET 1	PHE 61
L	MET 1	GLN 92
E	MET 1	LEU 69
H	MET 0	GLY 93

There are103 helices in PDB entry 8XA6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	47	Right-handed alpha
Helix 2	AA2	A	74	83	Right-handed alpha
Helix 3	AA3	A	110	112	Right-handed 310
Helix 4	AA4	A	150	155	Right-handed 310
Helix 5	AA5	A	205	227	Right-handed alpha
Helix 6	AA6	B	31	47	Right-handed alpha
Helix 7	AA7	B	74	85	Right-handed alpha
Helix 8	AA8	B	150	155	Right-handed 310
Helix 9	AA9	B	205	227	Right-handed alpha
Helix 10	AB1	C	31	43	Right-handed alpha
Helix 11	AB2	C	43	53	Right-handed alpha
Helix 12	AB3	C	77	84	Right-handed alpha
Helix 13	AB4	C	191	198	Right-handed alpha
Helix 14	AB5	C	206	211	Right-handed alpha
Helix 15	AB6	C	217	224	Right-handed alpha
Helix 16	AB7	C	229	239	Right-handed alpha
Helix 17	AB8	C	247	260	Right-handed alpha
Helix 18	AB9	C	268	279	Right-handed alpha
Helix 19	AC1	C	280	284	Right-handed 310
Helix 20	AC2	C	377	394	Right-handed alpha
Helix 21	AC3	C	411	439	Right-handed alpha
Helix 22	AC4	C	444	449	Right-handed 310
Helix 23	AC5	C	451	464	Right-handed alpha
Helix 24	AC6	C	475	483	Right-handed alpha
Helix 25	AC7	C	507	511	Right-handed 310
Helix 26	AC8	C	565	571	Right-handed alpha
Helix 27	AC9	C	628	632	Right-handed 310
Helix 28	AD1	C	633	646	Right-handed alpha
Helix 29	AD2	C	661	669	Right-handed alpha
Helix 30	AD3	C	779	784	Right-handed alpha
Helix 31	AD4	C	860	865	Right-handed 310
Helix 32	AD5	C	960	965	Right-handed alpha
Helix 33	AD6	C	967	984	Right-handed alpha
Helix 34	AD7	C	996	1007	Right-handed alpha
Helix 35	AD8	C	1076	1086	Right-handed alpha
Helix 36	AD9	C	1088	1098	Right-handed alpha
Helix 37	AE1	C	1102	1116	Right-handed alpha
Helix 38	AE2	C	1126	1138	Right-handed alpha
Helix 39	AE3	D	16	24	Right-handed alpha
Helix 40	AE4	D	113	118	Right-handed alpha
Helix 41	AE5	D	123	129	Right-handed alpha
Helix 42	AE6	D	153	159	Right-handed alpha
Helix 43	AE7	D	172	179	Right-handed alpha
Helix 44	AE8	D	184	194	Right-handed alpha
Helix 45	AE9	D	200	219	Right-handed alpha
Helix 46	AF1	D	222	227	Right-handed 310
Helix 47	AF2	D	235	239	Right-handed 310
Helix 48	AF3	D	252	270	Right-handed alpha
Helix 49	AF4	D	278	297	Right-handed alpha
Helix 50	AF5	D	315	320	Right-handed alpha
Helix 51	AF6	D	325	330	Right-handed alpha
Helix 52	AF7	D	359	366	Right-handed alpha
Helix 53	AF8	D	366	378	Right-handed alpha
Helix 54	AF9	D	382	392	Right-handed alpha
Helix 55	AG1	D	395	405	Right-handed alpha
Helix 56	AG2	D	419	421	Right-handed 310
Helix 57	AG3	D	439	444	Right-handed 310
Helix 58	AG4	D	462	472	Right-handed alpha
Helix 59	AG5	D	495	502	Right-handed alpha
Helix 60	AG6	D	518	529	Right-handed alpha
Helix 61	AG7	D	563	569	Right-handed alpha
Helix 62	AG8	D	583	588	Right-handed alpha
Helix 63	AG9	D	601	609	Right-handed alpha
Helix 64	AH1	D	616	631	Right-handed alpha
Helix 65	AH2	D	633	653	Right-handed alpha
Helix 66	AH3	D	659	664	Right-handed 310
Helix 67	AH4	D	666	677	Right-handed alpha
Helix 68	AH5	D	677	690	Right-handed alpha
Helix 69	AH6	D	693	720	Right-handed alpha
Helix 70	AH7	D	724	733	Right-handed alpha
Helix 71	AH8	D	737	746	Right-handed alpha
Helix 72	AH9	D	772	808	Right-handed alpha
Helix 73	AI1	D	838	843	Right-handed alpha
Helix 74	AI2	D	869	878	Right-handed alpha
Helix 75	AI3	D	888	892	Right-handed 310
Helix 76	AI4	D	899	904	Right-handed alpha
Helix 77	AI5	D	918	929	Right-handed alpha
Helix 78	AI6	D	930	932	Right-handed 310
Helix 79	AI7	D	952	961	Right-handed alpha
Helix 80	AI8	D	1030	1038	Right-handed alpha
Helix 81	AI9	D	1039	1059	Right-handed alpha
Helix 82	AJ1	D	1064	1073	Right-handed alpha
Helix 83	AJ2	D	1074	1076	Right-handed 310
Helix 84	AJ3	D	1095	1108	Right-handed alpha
Helix 85	AJ4	D	1122	1128	Right-handed alpha
Helix 86	AJ5	D	1142	1153	Right-handed alpha
Helix 87	AJ6	D	1160	1168	Right-handed alpha
Helix 88	AJ7	D	1173	1182	Right-handed 310
Helix 89	AJ8	F	6	11	Right-handed alpha
Helix 90	AJ9	F	15	34	Right-handed alpha
Helix 91	AK1	F	45	55	Right-handed alpha
Helix 92	AK2	L	7	14	Right-handed alpha
Helix 93	AK3	L	22	27	Right-handed alpha
Helix 94	AK4	L	33	42	Right-handed alpha
Helix 95	AK5	L	51	53	Right-handed 310
Helix 96	AK6	L	54	65	Right-handed alpha
Helix 97	AK7	L	84	92	Right-handed alpha
Helix 98	AK8	E	29	37	Right-handed alpha
Helix 99	AK9	E	38	40	Right-handed 310
Helix 100	AL1	E	53	61	Right-handed alpha
Helix 101	AL2	H	2	8	Right-handed alpha
Helix 102	AL3	H	22	38	Right-handed alpha
Helix 103	AL4	H	87	93	Right-handed alpha

There are 36 sheets in PDB entry 8XA6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	14	first strand
Strand 2	A	20	28	anti-parallel
Strand 3	A	188	200	anti-parallel
Strand 4	A	173	185	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	102	first strand
Strand 2	A	135	145	anti-parallel
Strand 3	A	50	58	anti-parallel
Strand 4	A	164	165	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	118	120	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	126	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	168	169	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	21	29	anti-parallel
Strand 3	B	188	200	anti-parallel
Strand 4	B	173	185	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	145	146	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	58	first strand
Strand 2	B	135	142	anti-parallel
Strand 3	B	95	102	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	108	first strand
Strand 2	B	126	130	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	13	16	anti-parallel
Strand 3	C	987	988	parallel
Strand 4	C	658	659	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	62	70	anti-parallel
Strand 3	C	93	100	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	115	117	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	468	470	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	409	410	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	159	163	anti-parallel
Strand 3	C	171	174	anti-parallel
Strand 4	C	180	183	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	350	first strand
Strand 2	C	360	365	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	487	first strand
Strand 2	C	528	531	anti-parallel
Strand 3	C	514	515	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	537	first strand
Strand 2	C	543	550	anti-parallel
Strand 3	C	557	564	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	574	575	first strand
Strand 2	C	610	611	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	592	595	first strand
Strand 2	C	600	603	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	684	first strand
Strand 2	C	689	694	anti-parallel
Strand 3	C	706	711	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	723	724	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1014	1015	first strand
Strand 2	C	1030	1039	anti-parallel
Strand 3	C	924	927	anti-parallel
Strand 4	C	930	938	anti-parallel
Strand 5	C	775	777	parallel
Strand 6	C	955	957	anti-parallel
Strand 7	C	757	763	parallel
Strand 8	C	1030	1039	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	799	first strand
Strand 2	C	907	918	anti-parallel
Strand 3	C	887	894	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	845	847	first strand
Strand 2	C	873	875	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1049	1051	first strand
Strand 2	D	339	346	anti-parallel
Strand 3	D	454	458	anti-parallel
Strand 4	D	410	413	anti-parallel
Strand 5	D	423	431	anti-parallel
Strand 6	D	354	358	parallel
Strand 7	D	436	438	anti-parallel
Strand 8	D	339	346	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1074	1075	first strand
Strand 2	D	334	335	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1142	1143	first strand
Strand 2	D	10	12	anti-parallel
Strand 3	D	1155	1156	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	536	540	parallel
Strand 3	D	557	561	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	824	826	first strand
Strand 2	D	884	886	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	829	831	first strand
Strand 2	D	834	837	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	977	981	first strand
Strand 2	D	989	994	anti-parallel
Strand 3	D	999	1004	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1078	1080	first strand
Strand 2	D	1092	1094	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	71	first strand
Strand 2	L	75	77	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	26	first strand
Strand 2	E	2	7	anti-parallel
Strand 3	E	46	50	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	61	first strand
Strand 2	H	65	71	anti-parallel
Strand 3	H	80	86	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XA6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XA6