Analysis of interatomic Contacts of Structural Units in PDB entry:
8XA8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XA8 entry

There are 8 chains in PDB entry 8XA8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	THR 228
B	GLU 5	THR 228
D	VAL 4	SER 1187
E	MET 1	LEU 69
F	MET 1	PHE 61
H	GLN 4	ALA 773
C	THR 2	GLU 1149
I	MET 1	GLN 92

There are144 helices in PDB entry 8XA8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	18	Right-handed 310
Helix 2	AA2	A	31	47	Right-handed alpha
Helix 3	AA3	A	74	83	Right-handed alpha
Helix 4	AA4	A	150	155	Right-handed alpha
Helix 5	AA5	A	205	228	Right-handed alpha
Helix 6	AA6	B	31	47	Right-handed alpha
Helix 7	AA7	B	74	84	Right-handed alpha
Helix 8	AA8	B	110	112	Right-handed 310
Helix 9	AA9	B	150	155	Right-handed 310
Helix 10	AB1	B	205	226	Right-handed alpha
Helix 11	AB2	D	16	24	Right-handed alpha
Helix 12	AB3	D	103	107	Right-handed 310
Helix 13	AB4	D	113	118	Right-handed alpha
Helix 14	AB5	D	121	130	Right-handed alpha
Helix 15	AB6	D	151	163	Right-handed alpha
Helix 16	AB7	D	170	181	Right-handed alpha
Helix 17	AB8	D	183	197	Right-handed alpha
Helix 18	AB9	D	199	219	Right-handed alpha
Helix 19	AC1	D	222	227	Right-handed 310
Helix 20	AC2	D	235	239	Right-handed 310
Helix 21	AC3	D	252	275	Right-handed alpha
Helix 22	AC4	D	277	297	Right-handed alpha
Helix 23	AC5	D	315	322	Right-handed alpha
Helix 24	AC6	D	328	332	Right-handed 310
Helix 25	AC7	D	359	366	Right-handed alpha
Helix 26	AC8	D	366	377	Right-handed alpha
Helix 27	AC9	D	382	393	Right-handed alpha
Helix 28	AD1	D	394	397	Right-handed 310
Helix 29	AD2	D	398	405	Right-handed alpha
Helix 30	AD3	D	419	421	Right-handed 310
Helix 31	AD4	D	440	444	Right-handed 310
Helix 32	AD5	D	462	472	Right-handed alpha
Helix 33	AD6	D	474	478	Right-handed 310
Helix 34	AD7	D	493	504	Right-handed alpha
Helix 35	AD8	D	519	528	Right-handed alpha
Helix 36	AD9	D	563	569	Right-handed alpha
Helix 37	AE1	D	582	588	Right-handed alpha
Helix 38	AE2	D	604	609	Right-handed alpha
Helix 39	AE3	D	616	631	Right-handed alpha
Helix 40	AE4	D	632	655	Right-handed alpha
Helix 41	AE5	D	668	689	Right-handed alpha
Helix 42	AE6	D	693	720	Right-handed alpha
Helix 43	AE7	D	724	732	Right-handed alpha
Helix 44	AE8	D	737	746	Right-handed alpha
Helix 45	AE9	D	772	781	Right-handed alpha
Helix 46	AF1	D	787	793	Right-handed alpha
Helix 47	AF2	D	798	809	Right-handed alpha
Helix 48	AF3	D	838	844	Right-handed alpha
Helix 49	AF4	D	869	879	Right-handed alpha
Helix 50	AF5	D	899	904	Right-handed alpha
Helix 51	AF6	D	918	938	Right-handed alpha
Helix 52	AF7	D	940	945	Right-handed alpha
Helix 53	AF8	D	952	961	Right-handed alpha
Helix 54	AF9	D	1030	1038	Right-handed alpha
Helix 55	AG1	D	1039	1058	Right-handed alpha
Helix 56	AG2	D	1063	1073	Right-handed alpha
Helix 57	AG3	D	1096	1106	Right-handed alpha
Helix 58	AG4	D	1122	1129	Right-handed alpha
Helix 59	AG5	D	1132	1139	Right-handed alpha
Helix 60	AG6	D	1141	1153	Right-handed alpha
Helix 61	AG7	D	1161	1168	Right-handed alpha
Helix 62	AG8	D	1173	1177	Right-handed 310
Helix 63	AG9	D	1179	1183	Right-handed 310
Helix 64	AH1	E	16	20	Right-handed 310
Helix 65	AH2	E	29	38	Right-handed alpha
Helix 66	AH3	E	52	61	Right-handed alpha
Helix 67	AH4	F	5	13	Right-handed alpha
Helix 68	AH5	F	15	33	Right-handed alpha
Helix 69	AH6	F	45	56	Right-handed alpha
Helix 70	AH7	H	5	51	Right-handed alpha
Helix 71	AH8	H	57	98	Right-handed alpha
Helix 72	AH9	H	139	141	Right-handed 310
Helix 73	AI1	H	142	148	Right-handed alpha
Helix 74	AI2	H	191	198	Right-handed alpha
Helix 75	AI3	H	198	222	Right-handed alpha
Helix 76	AI4	H	238	254	Right-handed alpha
Helix 77	AI5	H	259	261	Right-handed 310
Helix 78	AI6	H	270	280	Right-handed alpha
Helix 79	AI7	H	292	302	Right-handed alpha
Helix 80	AI8	H	311	321	Right-handed alpha
Helix 81	AI9	H	326	331	Right-handed alpha
Helix 82	AJ1	H	331	337	Right-handed alpha
Helix 83	AJ2	H	338	353	Right-handed alpha
Helix 84	AJ3	H	371	382	Right-handed alpha
Helix 85	AJ4	H	387	412	Right-handed alpha
Helix 86	AJ5	H	413	421	Right-handed alpha
Helix 87	AJ6	H	424	439	Right-handed alpha
Helix 88	AJ7	H	447	474	Right-handed alpha
Helix 89	AJ8	H	479	486	Right-handed alpha
Helix 90	AJ9	H	487	489	Right-handed 310
Helix 91	AK1	H	499	513	Right-handed alpha
Helix 92	AK2	H	517	519	Right-handed 310
Helix 93	AK3	H	520	531	Right-handed alpha
Helix 94	AK4	H	547	551	Right-handed 310
Helix 95	AK5	H	552	563	Right-handed alpha
Helix 96	AK6	H	584	589	Right-handed alpha
Helix 97	AK7	H	611	621	Right-handed alpha
Helix 98	AK8	H	646	650	Right-handed 310
Helix 99	AK9	H	652	657	Right-handed alpha
Helix 100	AL1	H	657	663	Right-handed alpha
Helix 101	AL2	H	673	684	Right-handed alpha
Helix 102	AL3	H	708	713	Right-handed alpha
Helix 103	AL4	H	727	731	Right-handed 310
Helix 104	AL5	H	735	745	Right-handed alpha
Helix 105	AL6	H	759	764	Right-handed alpha
Helix 106	AL7	C	30	51	Right-handed alpha
Helix 107	AL8	C	77	84	Right-handed alpha
Helix 108	AL9	C	192	199	Right-handed alpha
Helix 109	AM1	C	203	211	Right-handed alpha
Helix 110	AM2	C	214	224	Right-handed alpha
Helix 111	AM3	C	228	238	Right-handed alpha
Helix 112	AM4	C	247	259	Right-handed alpha
Helix 113	AM5	C	268	279	Right-handed alpha
Helix 114	AM6	C	281	286	Right-handed alpha
Helix 115	AM7	C	377	392	Right-handed alpha
Helix 116	AM8	C	411	438	Right-handed alpha
Helix 117	AM9	C	444	449	Right-handed alpha
Helix 118	AN1	C	451	464	Right-handed alpha
Helix 119	AN2	C	475	483	Right-handed alpha
Helix 120	AN3	C	507	511	Right-handed 310
Helix 121	AN4	C	568	572	Right-handed 310
Helix 122	AN5	C	604	608	Right-handed 310
Helix 123	AN6	C	614	619	Right-handed 310
Helix 124	AN7	C	622	626	Right-handed 310
Helix 125	AN8	C	633	647	Right-handed alpha
Helix 126	AN9	C	661	671	Right-handed alpha
Helix 127	AO1	C	695	697	Right-handed 310
Helix 128	AO2	C	779	784	Right-handed alpha
Helix 129	AO3	C	817	822	Right-handed 310
Helix 130	AO4	C	896	898	Right-handed 310
Helix 131	AO5	C	960	966	Right-handed alpha
Helix 132	AO6	C	967	984	Right-handed alpha
Helix 133	AO7	C	996	1008	Right-handed alpha
Helix 134	AO8	C	1043	1047	Right-handed 310
Helix 135	AO9	C	1078	1087	Right-handed alpha
Helix 136	AP1	C	1088	1097	Right-handed alpha
Helix 137	AP2	C	1102	1116	Right-handed alpha
Helix 138	AP3	C	1125	1138	Right-handed alpha
Helix 139	AP4	I	7	14	Right-handed alpha
Helix 140	AP5	I	15	28	Right-handed alpha
Helix 141	AP6	I	32	44	Right-handed alpha
Helix 142	AP7	I	53	65	Right-handed alpha
Helix 143	AP8	I	80	82	Right-handed 310
Helix 144	AP9	I	86	92	Right-handed alpha

There are 46 sheets in PDB entry 8XA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	14	first strand
Strand 2	A	20	29	anti-parallel
Strand 3	A	188	200	anti-parallel
Strand 4	A	173	185	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	95	102	anti-parallel
Strand 3	A	135	145	anti-parallel
Strand 4	A	50	56	anti-parallel
Strand 5	A	164	165	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	118	120	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	126	130	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	168	169	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	192	199	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	53	first strand
Strand 2	B	136	146	anti-parallel
Strand 3	B	95	101	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	164	165	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	119	120	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	108	first strand
Strand 2	B	126	130	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	168	169	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1155	1157	first strand
Strand 2	D	9	14	anti-parallel
Strand 3	C	1140	1145	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	230	233	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	166	169	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	C	1073	1075	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1049	1051	first strand
Strand 2	D	339	346	anti-parallel
Strand 3	D	454	458	anti-parallel
Strand 4	D	410	413	anti-parallel
Strand 5	D	423	431	anti-parallel
Strand 6	D	354	358	parallel
Strand 7	D	436	438	anti-parallel
Strand 8	D	339	346	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	536	540	parallel
Strand 3	D	557	561	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	752	753	first strand
Strand 2	D	757	758	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	824	826	first strand
Strand 2	D	884	887	anti-parallel
Strand 3	D	847	848	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	829	830	first strand
Strand 2	D	835	837	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	852	853	first strand
Strand 2	D	860	862	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	977	983	first strand
Strand 2	D	988	994	anti-parallel
Strand 3	D	999	1004	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1093	1095	first strand
Strand 2	D	1077	1080	anti-parallel
Strand 3	D	1116	1119	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	50	first strand
Strand 2	E	2	7	anti-parallel
Strand 3	E	21	26	anti-parallel
Strand 4	E	66	67	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	136	first strand
Strand 2	H	116	120	parallel
Strand 3	H	103	108	anti-parallel
Strand 4	H	160	169	anti-parallel
Strand 5	H	151	157	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	171	173	first strand
Strand 2	H	181	183	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	289	290	first strand
Strand 2	H	263	266	parallel
Strand 3	H	542	545	parallel
Strand 4	H	567	571	parallel
Strand 5	H	228	232	parallel
Strand 6	H	599	602	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	362	364	first strand
Strand 2	H	367	370	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	703	706	first strand
Strand 2	H	666	670	parallel
Strand 3	H	717	723	parallel
Strand 4	H	746	753	parallel
Strand 5	H	638	640	parallel
Strand 6	H	771	772	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	13	16	anti-parallel
Strand 3	C	987	988	parallel
Strand 4	C	658	659	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	62	71	anti-parallel
Strand 3	C	90	100	anti-parallel
Strand 4	C	105	116	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	468	470	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	140	first strand
Strand 2	C	407	410	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	158	162	anti-parallel
Strand 3	C	170	174	anti-parallel
Strand 4	C	180	184	anti-parallel
Strand 5	C	190	191	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	345	350	anti-parallel
Strand 3	C	360	365	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	337	first strand
Strand 2	C	340	343	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	487	first strand
Strand 2	C	528	530	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	537	first strand
Strand 2	C	543	550	anti-parallel
Strand 3	C	557	565	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	600	603	first strand
Strand 2	C	592	595	anti-parallel
Strand 3	C	574	575	anti-parallel
Strand 4	C	610	611	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	711	first strand
Strand 2	C	689	693	anti-parallel
Strand 3	C	680	685	anti-parallel
Strand 4	C	735	736	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	723	724	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	727	728	first strand
Strand 2	C	743	744	anti-parallel

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There are 7 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	763	first strand
Strand 2	C	955	957	parallel
Strand 3	C	774	778	anti-parallel
Strand 4	C	933	939	parallel
Strand 5	C	924	926	anti-parallel
Strand 6	C	1031	1039	anti-parallel
Strand 7	C	757	763	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	805	806	first strand
Strand 2	C	789	802	anti-parallel
Strand 3	C	905	917	anti-parallel
Strand 4	C	885	894	anti-parallel
Strand 5	C	835	836	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	841	847	first strand
Strand 2	C	873	878	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	68	69	first strand
Strand 2	I	77	78	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XA8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XA8