Analysis of interatomic Contacts of Structural Units in PDB entry:
8XA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XA9 entry

There are 6 chains in PDB entry 8XA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 95ASN 334
B
 ARG 95GLN 335
C
 T 1 G 11
D
 C 8 C 11
E
 T 1 T 10
F
 A 9 C 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8XA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 130Right-handed alpha
Helix 2
AA2
A
132 139Right-handed alpha
Helix 3
AA3
A
142 187Right-handed alpha
Helix 4
AA4
A
204 214Right-handed alpha
Helix 5
AA5
A
261 266Right-handed 310
Helix 6
AA6
A
267 280Right-handed alpha
Helix 7
AA7
A
310 334Right-handed alpha
Helix 8
AA8
B
125 130Right-handed alpha
Helix 9
AA9
B
132 139Right-handed alpha
Helix 10
AB1
B
142 188Right-handed alpha
Helix 11
AB2
B
204 209Right-handed alpha
Helix 12
AB3
B
209 214Right-handed alpha
Helix 13
AB4
B
261 266Right-handed 310
Helix 14
AB5
B
267 280Right-handed alpha
Helix 15
AB6
B
310 335Right-handed alpha
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There are 2 sheets in PDB entry 8XA9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 227first strand
Strand 2
A
234 243anti-parallel
Strand 3
A
246 254anti-parallel
Strand 4
A
291 297parallel
Strand 5
A
305 309anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 228first strand
Strand 2
B
233 243anti-parallel
Strand 3
B
246 255anti-parallel
Strand 4
B
291 298parallel
Strand 5
B
305 309anti-parallel
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