Analysis of interatomic Contacts of Structural Units in PDB entry:
8XAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XAJ entry

There are 2 chains in PDB entry 8XAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LYS 718
B
 THR 3LYS 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8XAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 25Right-handed alpha
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
83 92Right-handed alpha
Helix 5
AA5
A
92 125Right-handed alpha
Helix 6
AA6
A
133 141Right-handed 310
Helix 7
AA7
A
148 152Right-handed 310
Helix 8
AA8
A
158 194Right-handed alpha
Helix 9
AA9
A
198 201Right-handed 310
Helix 10
AB1
A
216 228Right-handed alpha
Helix 11
AB2
A
243 269Right-handed alpha
Helix 12
AB3
A
291 313Right-handed alpha
Helix 13
AB4
A
329 339Right-handed alpha
Helix 14
AB5
A
367 388Right-handed alpha
Helix 15
AB6
A
390 400Right-handed alpha
Helix 16
AB7
A
408 412Right-handed 310
Helix 17
AB8
A
422 452Right-handed alpha
Helix 18
AB9
A
456 482Right-handed alpha
Helix 19
AC1
A
485 495Right-handed alpha
Helix 20
AC2
A
500 532Right-handed alpha
Helix 21
AC3
A
534 548Right-handed alpha
Helix 22
AC4
A
569 583Right-handed alpha
Helix 23
AC5
A
589 612Right-handed alpha
Helix 24
AC6
A
623 649Right-handed alpha
Helix 25
AC7
A
654 676Right-handed alpha
Helix 26
AC8
A
677 681Right-handed 310
Helix 27
AC9
A
684 699Right-handed alpha
Helix 28
AD1
A
703 709Right-handed alpha
Helix 29
AD2
B
4 25Right-handed alpha
Helix 30
AD3
B
26 28Right-handed 310
Helix 31
AD4
B
39 43Right-handed 310
Helix 32
AD5
B
83 92Right-handed alpha
Helix 33
AD6
B
92 125Right-handed alpha
Helix 34
AD7
B
133 141Right-handed 310
Helix 35
AD8
B
148 152Right-handed 310
Helix 36
AD9
B
158 194Right-handed alpha
Helix 37
AE1
B
198 201Right-handed 310
Helix 38
AE2
B
216 228Right-handed alpha
Helix 39
AE3
B
243 269Right-handed alpha
Helix 40
AE4
B
291 313Right-handed alpha
Helix 41
AE5
B
329 339Right-handed alpha
Helix 42
AE6
B
367 388Right-handed alpha
Helix 43
AE7
B
390 400Right-handed alpha
Helix 44
AE8
B
408 412Right-handed 310
Helix 45
AE9
B
422 452Right-handed alpha
Helix 46
AF1
B
456 482Right-handed alpha
Helix 47
AF2
B
485 495Right-handed alpha
Helix 48
AF3
B
500 532Right-handed alpha
Helix 49
AF4
B
534 548Right-handed alpha
Helix 50
AF5
B
569 583Right-handed alpha
Helix 51
AF6
B
589 612Right-handed alpha
Helix 52
AF7
B
623 649Right-handed alpha
Helix 53
AF8
B
654 676Right-handed alpha
Helix 54
AF9
B
677 681Right-handed 310
Helix 55
AG1
B
684 699Right-handed alpha
Helix 56
AG2
B
703 709Right-handed alpha
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There are 2 sheets in PDB entry 8XAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
A
349 352anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 238first strand
Strand 2
B
322 326anti-parallel
Strand 3
B
203 207anti-parallel
Strand 4
B
349 352anti-parallel
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