Analysis of interatomic Contacts of Structural Units in PDB entry:
8XBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XBB entry

There is 1 chain in PDB entry 8XBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 28HIS 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8XBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 56Right-handed alpha
Helix 2
AA2
A
67 79Right-handed alpha
Helix 3
AA3
A
92 102Right-handed alpha
Helix 4
AA4
A
108 111Right-handed 310
Helix 5
AA5
A
112 119Right-handed alpha
Helix 6
AA6
A
120 126Right-handed alpha
Helix 7
AA7
A
149 156Right-handed alpha
Helix 8
AA8
A
158 162Right-handed 310
Helix 9
AA9
A
164 178Right-handed alpha
Helix 10
AB1
A
186 189Right-handed 310
Helix 11
AB2
A
190 215Right-handed alpha
Helix 12
AB3
A
219 222Right-handed 310
Helix 13
AB4
A
223 238Right-handed alpha
Helix 14
AB5
A
245 249Right-handed 310
Helix 15
AB6
A
250 260Right-handed alpha
Helix 16
AB7
A
271 280Right-handed alpha
Helix 17
AB8
A
287 289Right-handed 310
Helix 18
AB9
A
323 334Right-handed alpha
Helix 19
AC1
A
335 345Right-handed alpha
Helix 20
AC2
A
354 359Right-handed 310
Helix 21
AC3
A
361 374Right-handed alpha
Helix 22
AC4
A
380 385Right-handed alpha
Helix 23
AC5
A
385 402Right-handed alpha
Helix 24
AC6
A
406 425Right-handed alpha
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There are 3 sheets in PDB entry 8XBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
29 34parallel
Strand 3
A
87 90parallel
Strand 4
A
309 318anti-parallel
Strand 5
A
135 148anti-parallel
Strand 6
A
291 294anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 269first strand
Strand 2
A
135 148anti-parallel
Strand 3
A
309 318anti-parallel
Strand 4
A
377 379parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
132 133anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il