Analysis of interatomic Contacts of Structural Units in PDB entry:
8XBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XBD entry

There are 2 chains in PDB entry 8XBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 21LYS 416
A
 ASN 21LYS 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8XBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
30 34Right-handed 310
Helix 2
AA2
B
42 46Right-handed 310
Helix 3
AA3
B
47 51Right-handed 310
Helix 4
AA4
B
70 79Right-handed 310
Helix 5
AA5
B
85 93Right-handed alpha
Helix 6
AA6
B
94 102Right-handed alpha
Helix 7
AA7
B
118 124Right-handed alpha
Helix 8
AA8
B
125 144Right-handed alpha
Helix 9
AA9
B
157 162Right-handed alpha
Helix 10
AB1
B
168 185Right-handed alpha
Helix 11
AB2
B
198 204Right-handed alpha
Helix 12
AB3
B
206 211Right-handed alpha
Helix 13
AB4
B
212 214Right-handed 310
Helix 14
AB5
B
245 249Right-handed 310
Helix 15
AB6
B
251 262Right-handed alpha
Helix 16
AB7
B
265 267Right-handed 310
Helix 17
AB8
B
280 284Right-handed 310
Helix 18
AB9
B
306 315Right-handed alpha
Helix 19
AC1
B
328 335Right-handed alpha
Helix 20
AC2
B
373 388Right-handed alpha
Helix 21
AC3
B
396 400Right-handed 310
Helix 22
AC4
B
403 414Right-handed alpha
Helix 23
AC5
A
30 34Right-handed 310
Helix 24
AC6
A
42 46Right-handed 310
Helix 25
AC7
A
47 51Right-handed 310
Helix 26
AC8
A
70 79Right-handed 310
Helix 27
AC9
A
85 93Right-handed alpha
Helix 28
AD1
A
94 102Right-handed alpha
Helix 29
AD2
A
118 123Right-handed alpha
Helix 30
AD3
A
125 144Right-handed alpha
Helix 31
AD4
A
157 162Right-handed alpha
Helix 32
AD5
A
168 185Right-handed alpha
Helix 33
AD6
A
198 204Right-handed alpha
Helix 34
AD7
A
206 211Right-handed alpha
Helix 35
AD8
A
212 214Right-handed 310
Helix 36
AD9
A
245 249Right-handed 310
Helix 37
AE1
A
251 262Right-handed alpha
Helix 38
AE2
A
265 267Right-handed 310
Helix 39
AE3
A
280 284Right-handed 310
Helix 40
AE4
A
306 315Right-handed alpha
Helix 41
AE5
A
328 335Right-handed alpha
Helix 42
AE6
A
373 387Right-handed alpha
Helix 43
AE7
A
396 400Right-handed 310
Helix 44
AE8
A
403 414Right-handed alpha
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There are 6 sheets in PDB entry 8XBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
53 61anti-parallel
Strand 3
B
106 112parallel
Strand 4
B
147 151parallel
Strand 5
B
189 194parallel
Strand 6
B
216 219parallel
Strand 7
B
269 274parallel
Strand 8
B
391 395parallel
Strand 9
B
24 29parallel
Strand 10
B
53 61parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
325 327anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 348first strand
Strand 2
B
353 359anti-parallel
Strand 3
B
365 370anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
53 61anti-parallel
Strand 3
A
106 112parallel
Strand 4
A
147 151parallel
Strand 5
A
189 194parallel
Strand 6
A
216 219parallel
Strand 7
A
269 274parallel
Strand 8
A
391 395parallel
Strand 9
A
24 29parallel
Strand 10
A
53 61parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
325 327anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
353 359anti-parallel
Strand 3
A
365 370anti-parallel
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