Analysis of interatomic Contacts of Structural Units in PDB entry:
8XBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XBP entry

There are 2 chains in PDB entry 8XBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 23LEU 226
Q
 MET 23LEU 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8XBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 33Right-handed 310
Helix 2
AA2
A
34 49Right-handed alpha
Helix 3
AA3
A
51 55Right-handed 310
Helix 4
AA4
A
58 66Right-handed alpha
Helix 5
AA5
A
115 120Right-handed 310
Helix 6
AA6
A
157 160Right-handed 310
Helix 7
AA7
A
163 179Right-handed alpha
Helix 8
AA8
A
192 202Right-handed alpha
Helix 9
AA9
A
216 225Right-handed alpha
Helix 10
AB1
Q
31 33Right-handed 310
Helix 11
AB2
Q
34 49Right-handed alpha
Helix 12
AB3
Q
51 55Right-handed 310
Helix 13
AB4
Q
58 66Right-handed alpha
Helix 14
AB5
Q
115 120Right-handed 310
Helix 15
AB6
Q
157 160Right-handed 310
Helix 16
AB7
Q
163 179Right-handed alpha
Helix 17
AB8
Q
192 202Right-handed alpha
Helix 18
AB9
Q
216 225Right-handed alpha
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There are 2 sheets in PDB entry 8XBP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
24 29anti-parallel
Strand 3
A
76 83anti-parallel
Strand 4
A
128 138anti-parallel
Strand 5
A
147 155anti-parallel
Strand 6
A
184 189parallel
Strand 7
Q
210 215anti-parallel
Strand 8
A
205 207anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
101 104first strand
Strand 2
Q
24 29anti-parallel
Strand 3
Q
76 83anti-parallel
Strand 4
Q
128 138anti-parallel
Strand 5
Q
147 155anti-parallel
Strand 6
Q
184 189parallel
Strand 7
A
210 215anti-parallel
Strand 8
Q
205 207anti-parallel
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