Analysis of interatomic Contacts of Structural Units in PDB entry:
8XC3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XC3 entry

There are 2 chains in PDB entry 8XC3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 353
B
 SER 5ILE 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 8XC3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed alpha
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
29 33Right-handed 310
Helix 4
AA4
A
55 57Right-handed 310
Helix 5
AA5
A
59 73Right-handed alpha
Helix 6
AA6
A
84 100Right-handed alpha
Helix 7
AA7
A
102 108Right-handed alpha
Helix 8
AA8
A
114 116Right-handed 310
Helix 9
AA9
A
147 151Right-handed 310
Helix 10
AB1
A
152 156Right-handed 310
Helix 11
AB2
A
162 189Right-handed alpha
Helix 12
AB3
A
194 201Right-handed alpha
Helix 13
AB4
A
241 243Right-handed 310
Helix 14
AB5
A
269 276Right-handed alpha
Helix 15
AB6
A
313 321Right-handed 310
Helix 16
AB7
A
330 338Right-handed alpha
Helix 17
AB8
A
346 352Right-handed 310
Helix 18
AB9
B
11 16Right-handed alpha
Helix 19
AC1
B
23 27Right-handed 310
Helix 20
AC2
B
29 33Right-handed 310
Helix 21
AC3
B
55 57Right-handed 310
Helix 22
AC4
B
59 73Right-handed alpha
Helix 23
AC5
B
84 100Right-handed alpha
Helix 24
AC6
B
102 108Right-handed alpha
Helix 25
AC7
B
112 120Right-handed 310
Helix 26
AC8
B
147 151Right-handed 310
Helix 27
AC9
B
152 156Right-handed 310
Helix 28
AD1
B
162 189Right-handed alpha
Helix 29
AD2
B
194 201Right-handed alpha
Helix 30
AD3
B
241 243Right-handed 310
Helix 31
AD4
B
269 276Right-handed alpha
Helix 32
AD5
B
313 317Right-handed 310
Helix 33
AD6
B
330 338Right-handed alpha
Helix 34
AD7
B
346 352Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 8XC3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
253 256parallel
Strand 3
A
246 250anti-parallel
Strand 4
A
285 287anti-parallel
Strand 5
A
225 228anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
75 79parallel
Strand 3
A
264 268anti-parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
295 302anti-parallel
Strand 6
A
206 213anti-parallel
Strand 7
A
139 146anti-parallel
Strand 8
A
122 124anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
328 329anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
253 256parallel
Strand 3
B
246 250anti-parallel
Strand 4
B
285 287anti-parallel
Strand 5
B
225 228anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
75 79parallel
Strand 3
B
264 268anti-parallel
Strand 4
B
234 239anti-parallel
Strand 5
B
295 302anti-parallel
Strand 6
B
206 213anti-parallel
Strand 7
B
139 146anti-parallel
Strand 8
B
122 124anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 310first strand
Strand 2
B
328 329anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il