Analysis of interatomic Contacts of Structural Units in PDB entry:
8XC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XC8 entry

There are 2 chains in PDB entry 8XC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LYS 240
B
 ASN 2GLN 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8XC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
54 60Right-handed alpha
Helix 4
AA4
A
64 84Right-handed alpha
Helix 5
AA5
A
101 107Right-handed alpha
Helix 6
AA6
A
109 114Right-handed alpha
Helix 7
AA7
A
166 178Right-handed alpha
Helix 8
AA8
A
187 192Right-handed alpha
Helix 9
AA9
A
213 239Right-handed alpha
Helix 10
AB1
B
16 30Right-handed alpha
Helix 11
AB2
B
43 54Right-handed alpha
Helix 12
AB3
B
54 60Right-handed alpha
Helix 13
AB4
B
64 84Right-handed alpha
Helix 14
AB5
B
101 107Right-handed alpha
Helix 15
AB6
B
109 114Right-handed alpha
Helix 16
AB7
B
143 147Right-handed 310
Helix 17
AB8
B
166 178Right-handed alpha
Helix 18
AB9
B
187 192Right-handed alpha
Helix 19
AC1
B
193 197Right-handed 310
Helix 20
AC2
B
215 226Right-handed alpha
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There are 4 sheets in PDB entry 8XC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
8 12parallel
Strand 3
A
88 93parallel
Strand 4
A
161 165anti-parallel
Strand 5
A
122 125anti-parallel
Strand 6
A
202 207parallel
Strand 7
B
148 155anti-parallel
Strand 8
B
134 137anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
211 212anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
148 153anti-parallel
Strand 3
B
202 207anti-parallel
Strand 4
B
122 125parallel
Strand 5
B
161 165anti-parallel
Strand 6
B
88 93anti-parallel
Strand 7
B
8 12parallel
Strand 8
B
35 38parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
211 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il