Analysis of interatomic Contacts of Structural Units in PDB entry:
8XCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XCC entry

There are 4 chains in PDB entry 8XCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 797
B
 G -36 C 3
C
 A -2 G 7
D
 G -6 G -1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8XCC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 41Right-handed alpha
Helix 2
AA2
A
57 68Right-handed alpha
Helix 3
AA3
A
76 88Right-handed alpha
Helix 4
AA4
A
92 96Right-handed 310
Helix 5
AA5
A
100 103Right-handed 310
Helix 6
AA6
A
104 110Right-handed alpha
Helix 7
AA7
A
122 131Right-handed alpha
Helix 8
AA8
A
187 199Right-handed alpha
Helix 9
AA9
A
211 238Right-handed alpha
Helix 10
AB1
A
387 391Right-handed 310
Helix 11
AB2
A
522 552Right-handed alpha
Helix 12
AB3
A
556 566Right-handed alpha
Helix 13
AB4
A
566 571Right-handed alpha
Helix 14
AB5
A
578 606Right-handed alpha
Helix 15
AB6
A
607 609Right-handed 310
Helix 16
AB7
A
621 642Right-handed alpha
Helix 17
AB8
A
660 689Right-handed alpha
Helix 18
AB9
A
715 720Right-handed alpha
Helix 19
AC1
A
723 737Right-handed alpha
Helix 20
AC2
A
784 797Right-handed alpha
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There are 5 sheets in PDB entry 8XCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
432 440anti-parallel
Strand 3
A
416 429anti-parallel
Strand 4
A
349 352anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
432 440anti-parallel
Strand 3
A
416 429anti-parallel
Strand 4
A
403 408anti-parallel
Strand 5
A
394 397anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
53 56anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 365first strand
Strand 2
A
368 373anti-parallel
Strand 3
A
380 383anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 517first strand
Strand 2
A
485 490anti-parallel
Strand 3
A
474 478anti-parallel
Strand 4
A
693 696parallel
Strand 5
A
739 742parallel
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