Analysis of interatomic Contacts of Structural Units in PDB entry:
8XCI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XCI entry

There are 3 chains in PDB entry 8XCI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	VAL 616	GLY 995
J	VAL 616	GLY 995
Z	VAL 613	GLY 995

There are 11 helices in PDB entry 8XCI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	755	759	Right-handed 310
Helix 2	AA2	F	815	824	Right-handed alpha
Helix 3	AA3	F	825	831	Right-handed alpha
Helix 4	AA4	F	907	911	Right-handed 310
Helix 5	AA5	J	758	763	Right-handed alpha
Helix 6	AA6	J	810	824	Right-handed alpha
Helix 7	AA7	J	825	832	Right-handed alpha
Helix 8	AA8	Z	758	763	Right-handed alpha
Helix 9	AA9	Z	811	824	Right-handed alpha
Helix 10	AB1	Z	827	832	Right-handed alpha
Helix 11	AB2	Z	907	911	Right-handed 310

There are 25 sheets in PDB entry 8XCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	636	640	first strand
Strand 2	F	677	681	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	665	673	first strand
Strand 2	F	651	659	anti-parallel
Strand 3	F	686	695	anti-parallel
Strand 4	F	705	711	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	717	725	first strand
Strand 2	F	728	735	anti-parallel
Strand 3	F	772	774	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	764	769	first strand
Strand 2	F	743	749	anti-parallel
Strand 3	F	785	792	anti-parallel
Strand 4	F	801	805	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	842	848	first strand
Strand 2	F	863	871	anti-parallel
Strand 3	F	874	882	anti-parallel
Strand 4	F	895	898	anti-parallel
Strand 5	Z	902	905	parallel
Strand 6	Z	916	918	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	852	853	first strand
Strand 2	F	859	860	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	885	886	first strand
Strand 2	F	891	892	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	843	854	first strand
Strand 2	J	858	871	anti-parallel
Strand 3	J	874	878	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	843	854	first strand
Strand 2	J	858	871	anti-parallel
Strand 3	J	881	885	anti-parallel
Strand 4	J	892	898	anti-parallel
Strand 5	F	901	905	parallel
Strand 6	F	914	919	anti-parallel
Strand 7	F	923	927	anti-parallel
Strand 8	Z	928	932	parallel
Strand 9	J	933	934	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	932	934	first strand
Strand 2	J	927	929	parallel
Strand 3	Z	923	924	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	955	957	first strand
Strand 2	Z	960	962	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	961	965	first strand
Strand 2	J	955	959	parallel
Strand 3	J	948	949	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	970	971	first strand
Strand 2	F	975	978	parallel
Strand 3	Z	982	988	parallel
Strand 4	J	988	993	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	983	984	first strand
Strand 2	J	977	978	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	987	988	first strand
Strand 2	Z	992	993	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	622	629	first strand
Strand 2	J	636	642	anti-parallel
Strand 3	J	677	681	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	665	673	first strand
Strand 2	J	651	659	anti-parallel
Strand 3	J	688	695	anti-parallel
Strand 4	J	701	709	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	719	722	first strand
Strand 2	J	729	734	anti-parallel
Strand 3	J	772	774	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	764	769	first strand
Strand 2	J	743	749	anti-parallel
Strand 3	J	785	792	anti-parallel
Strand 4	J	804	805	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	924	925	first strand
Strand 2	J	914	919	anti-parallel
Strand 3	J	901	905	anti-parallel
Strand 4	Z	891	898	parallel
Strand 5	Z	874	886	anti-parallel
Strand 6	Z	859	871	anti-parallel
Strand 7	Z	846	853	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	622	629	first strand
Strand 2	Z	636	642	anti-parallel
Strand 3	Z	677	680	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	665	673	first strand
Strand 2	Z	652	659	anti-parallel
Strand 3	Z	687	692	anti-parallel
Strand 4	Z	705	709	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	719	721	first strand
Strand 2	Z	728	734	anti-parallel
Strand 3	Z	772	775	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	764	769	first strand
Strand 2	Z	743	749	anti-parallel
Strand 3	Z	785	792	anti-parallel
Strand 4	Z	797	805	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	938	939	first strand
Strand 2	Z	948	949	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XCI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XCI