Analysis of interatomic Contacts of Structural Units in PDB entry:
8XCJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XCJ entry

There are 6 chains in PDB entry 8XCJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	TRP 421
B	ALA 0	TRP 421
C	ALA 0	TRP 421
Z	ALA 713	VAL 1132
J	ALA 713	VAL 1132
F	ALA 713	VAL 1132

There are 19 helices in PDB entry 8XCJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	159	163	Right-handed 310
Helix 2	AA2	A	397	401	Right-handed 310
Helix 3	AA3	B	159	163	Right-handed 310
Helix 4	AA4	B	239	241	Right-handed 310
Helix 5	AA5	B	397	401	Right-handed 310
Helix 6	AA6	C	159	163	Right-handed 310
Helix 7	AA7	C	397	401	Right-handed 310
Helix 8	AA8	Z	758	763	Right-handed alpha
Helix 9	AA9	Z	810	824	Right-handed alpha
Helix 10	AB1	Z	827	832	Right-handed alpha
Helix 11	AB2	Z	907	911	Right-handed 310
Helix 12	AB3	J	758	763	Right-handed alpha
Helix 13	AB4	J	811	824	Right-handed alpha
Helix 14	AB5	J	825	831	Right-handed alpha
Helix 15	AB6	J	907	911	Right-handed 310
Helix 16	AB7	F	758	763	Right-handed alpha
Helix 17	AB8	F	810	824	Right-handed alpha
Helix 18	AB9	F	827	832	Right-handed alpha
Helix 19	AC1	F	907	911	Right-handed 310

There are 31 sheets in PDB entry 8XCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	14	first strand
Strand 2	A	40	53	anti-parallel
Strand 3	A	56	68	anti-parallel
Strand 4	A	80	89	anti-parallel
Strand 5	A	99	105	anti-parallel
Strand 6	A	124	133	anti-parallel
Strand 7	A	138	152	anti-parallel
Strand 8	A	165	182	anti-parallel
Strand 9	A	185	197	anti-parallel
Strand 10	A	211	223	anti-parallel
Strand 11	A	226	237	anti-parallel
Strand 12	A	267	280	anti-parallel
Strand 13	A	284	297	anti-parallel
Strand 14	A	303	315	anti-parallel
Strand 15	A	320	333	anti-parallel
Strand 16	A	339	351	anti-parallel
Strand 17	A	362	373	anti-parallel
Strand 18	A	407	421	anti-parallel
Strand 19	A	2	14	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	112	first strand
Strand 2	A	117	120	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	260	262	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	378	first strand
Strand 2	A	393	395	anti-parallel

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There are 19 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	14	first strand
Strand 2	B	40	53	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	80	89	anti-parallel
Strand 5	B	99	105	anti-parallel
Strand 6	B	124	133	anti-parallel
Strand 7	B	138	152	anti-parallel
Strand 8	B	165	182	anti-parallel
Strand 9	B	185	197	anti-parallel
Strand 10	B	211	221	anti-parallel
Strand 11	B	227	237	anti-parallel
Strand 12	B	267	280	anti-parallel
Strand 13	B	284	297	anti-parallel
Strand 14	B	303	315	anti-parallel
Strand 15	B	320	333	anti-parallel
Strand 16	B	339	351	anti-parallel
Strand 17	B	362	373	anti-parallel
Strand 18	B	408	421	anti-parallel
Strand 19	B	2	14	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	117	120	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	260	262	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	378	first strand
Strand 2	B	393	395	anti-parallel

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There are 19 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	14	first strand
Strand 2	C	40	53	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	80	89	anti-parallel
Strand 5	C	99	105	anti-parallel
Strand 6	C	124	133	anti-parallel
Strand 7	C	138	152	anti-parallel
Strand 8	C	165	180	anti-parallel
Strand 9	C	185	197	anti-parallel
Strand 10	C	211	223	anti-parallel
Strand 11	C	226	237	anti-parallel
Strand 12	C	267	280	anti-parallel
Strand 13	C	284	297	anti-parallel
Strand 14	C	303	315	anti-parallel
Strand 15	C	320	333	anti-parallel
Strand 16	C	339	352	anti-parallel
Strand 17	C	362	374	anti-parallel
Strand 18	C	407	421	anti-parallel
Strand 19	C	2	14	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	117	120	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	260	262	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	378	first strand
Strand 2	C	393	395	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	719	725	first strand
Strand 2	Z	728	734	anti-parallel
Strand 3	Z	772	775	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	764	769	first strand
Strand 2	Z	743	749	anti-parallel
Strand 3	Z	785	792	anti-parallel
Strand 4	Z	801	805	anti-parallel

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There are 43 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	843	845	first strand
Strand 2	Z	848	853	first strand
Strand 3	Z	859	871	anti-parallel
Strand 4	Z	874	886	anti-parallel
Strand 5	Z	891	898	anti-parallel
Strand 6	Z	902	905	first strand
Strand 7	Z	914	918	anti-parallel
Strand 8	Z	923	925	anti-parallel
Strand 9	Z	928	929	first strand
Strand 10	Z	933	934	first strand
Strand 11	Z	937	939	first strand
Strand 12	Z	948	949	anti-parallel
Strand 13	Z	954	957	anti-parallel
Strand 14	Z	959	978	first strand
Strand 15	Z	982	994	first strand
Strand 16	J	843	853	first strand
Strand 17	J	859	871	anti-parallel
Strand 18	J	874	887	anti-parallel
Strand 19	J	890	898	anti-parallel
Strand 20	J	901	905	parallel
Strand 21	J	914	918	anti-parallel
Strand 22	J	923	925	anti-parallel
Strand 23	J	928	929	parallel
Strand 24	J	933	934	parallel
Strand 25	J	938	939	parallel
Strand 26	J	948	949	anti-parallel
Strand 27	J	954	957	anti-parallel
Strand 28	J	959	978	parallel
Strand 29	J	982	993	parallel
Strand 30	F	842	853	first strand
Strand 31	F	859	871	anti-parallel
Strand 32	F	874	887	anti-parallel
Strand 33	F	890	898	anti-parallel
Strand 34	F	902	905	parallel
Strand 35	F	914	919	anti-parallel
Strand 36	F	922	925	anti-parallel
Strand 37	F	928	929	parallel
Strand 38	F	932	934	parallel
Strand 39	F	938	939	parallel
Strand 40	F	948	949	anti-parallel
Strand 41	F	954	957	anti-parallel
Strand 42	F	959	978	parallel
Strand 43	F	982	994	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	999	1003	first strand
Strand 2	Z	1032	1042	first strand
Strand 3	Z	1078	1086	anti-parallel
Strand 4	Z	1113	1114	anti-parallel
Strand 5	Z	1117	1122	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	1007	1010	first strand
Strand 2	Z	1013	1016	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	1066	1073	first strand
Strand 2	Z	1057	1063	anti-parallel
Strand 3	Z	1093	1101	anti-parallel
Strand 4	Z	1018	1024	anti-parallel
Strand 5	J	1129	1132	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	1044	1048	first strand
Strand 2	Z	1051	1055	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	1129	1132	first strand
Strand 2	F	1018	1024	anti-parallel
Strand 3	F	1093	1101	anti-parallel
Strand 4	F	1057	1063	anti-parallel
Strand 5	F	1066	1073	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	719	721	first strand
Strand 2	J	728	734	anti-parallel
Strand 3	J	772	775	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	764	769	first strand
Strand 2	J	743	749	anti-parallel
Strand 3	J	785	792	anti-parallel
Strand 4	J	801	805	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	999	1003	first strand
Strand 2	J	1032	1042	first strand
Strand 3	J	1078	1086	anti-parallel
Strand 4	J	1113	1114	anti-parallel
Strand 5	J	1117	1122	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1007	1010	first strand
Strand 2	J	1013	1016	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1066	1073	first strand
Strand 2	J	1057	1063	anti-parallel
Strand 3	J	1093	1101	anti-parallel
Strand 4	J	1018	1024	anti-parallel
Strand 5	F	1129	1132	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1044	1048	first strand
Strand 2	J	1051	1055	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	719	721	first strand
Strand 2	F	724	725	first strand
Strand 3	F	728	734	anti-parallel
Strand 4	F	772	775	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	764	769	first strand
Strand 2	F	743	749	anti-parallel
Strand 3	F	785	792	anti-parallel
Strand 4	F	801	805	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	999	1003	first strand
Strand 2	F	1032	1042	first strand
Strand 3	F	1078	1086	anti-parallel
Strand 4	F	1113	1114	anti-parallel
Strand 5	F	1117	1122	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1007	1010	first strand
Strand 2	F	1013	1016	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1044	1048	first strand
Strand 2	F	1051	1055	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XCJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XCJ