Analysis of interatomic Contacts of Structural Units in PDB entry:
8XCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XCM entry

There are 3 chains in PDB entry 8XCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3LYS 542
B
 ARG 48PHE 183
C
 ILE 40SER 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8XCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
55 61Right-handed alpha
Helix 4
AA4
A
92 97Right-handed 310
Helix 5
AA5
A
106 110Right-handed 310
Helix 6
AA6
A
119 123Right-handed 310
Helix 7
AA7
A
124 130Right-handed alpha
Helix 8
AA8
A
138 154Right-handed alpha
Helix 9
AA9
A
181 194Right-handed alpha
Helix 10
AB1
A
233 245Right-handed alpha
Helix 11
AB2
A
292 301Right-handed alpha
Helix 12
AB3
A
355 360Right-handed 310
Helix 13
AB4
A
373 384Right-handed alpha
Helix 14
AB5
A
387 401Right-handed alpha
Helix 15
AB6
A
441 463Right-handed alpha
Helix 16
AB7
A
522 541Right-handed alpha
Helix 17
AB8
B
49 63Right-handed alpha
Helix 18
AB9
B
68 83Right-handed alpha
Helix 19
AC1
B
85 100Right-handed alpha
Helix 20
AC2
B
104 111Right-handed alpha
Helix 21
AC3
B
117 131Right-handed alpha
Helix 22
AC4
B
150 154Right-handed 310
Helix 23
AC5
B
168 172Right-handed 310
Helix 24
AC6
C
41 51Right-handed alpha
Helix 25
AC7
C
52 57Right-handed alpha
Helix 26
AC8
C
95 105Right-handed alpha
Helix 27
AC9
C
119 124Right-handed alpha
Helix 28
AD1
C
127 141Right-handed alpha
Helix 29
AD2
C
163 172Right-handed alpha
Helix 30
AD3
C
185 197Right-handed alpha
Helix 31
AD4
C
201 206Right-handed alpha
Helix 32
AD5
C
245 255Right-handed alpha
Helix 33
AD6
C
265 274Right-handed alpha
Helix 34
AD7
C
279 291Right-handed alpha
Helix 35
AD8
C
318 322Right-handed 310
Helix 36
AD9
C
335 343Right-handed alpha
Helix 37
AE1
C
365 370Right-handed alpha
Helix 38
AE2
C
373 382Right-handed alpha
Helix 39
AE3
C
408 423Right-handed alpha
Helix 40
AE4
C
431 441Right-handed alpha
Helix 41
AE5
C
447 451Right-handed 310
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There are 8 sheets in PDB entry 8XCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
33 36parallel
Strand 3
A
10 13parallel
Strand 4
A
284 287parallel
Strand 5
A
506 508parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
435 437parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
347 349anti-parallel
Strand 3
A
365 369anti-parallel
Strand 4
A
402 408anti-parallel
Strand 5
A
329 332anti-parallel
Strand 6
A
465 469anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 259first strand
Strand 2
A
265 271anti-parallel
Strand 3
A
278 281anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
480 481anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
76 79anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 224first strand
Strand 2
C
229 230anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
387 388first strand
Strand 2
C
391 392anti-parallel
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