Analysis of interatomic Contacts of Structural Units in PDB entry:
8XDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XDD entry

There are 3 chains in PDB entry 8XDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 51ARG 381
B
 LYS 51ARG 381
C
 LYS 51ARG 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8XDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 67Right-handed alpha
Helix 2
AA2
A
68 70Right-handed 310
Helix 3
AA3
A
73 88Right-handed alpha
Helix 4
AA4
A
88 109Right-handed alpha
Helix 5
AA5
A
112 119Right-handed alpha
Helix 6
AA6
A
124 135Right-handed alpha
Helix 7
AA7
A
142 144Right-handed 310
Helix 8
AA8
A
145 168Right-handed alpha
Helix 9
AA9
A
169 171Right-handed 310
Helix 10
AB1
A
176 191Right-handed alpha
Helix 11
AB2
A
212 216Right-handed 310
Helix 12
AB3
A
217 231Right-handed alpha
Helix 13
AB4
A
237 252Right-handed alpha
Helix 14
AB5
A
252 273Right-handed alpha
Helix 15
AB6
A
276 282Right-handed alpha
Helix 16
AB7
A
286 298Right-handed alpha
Helix 17
AB8
A
304 330Right-handed alpha
Helix 18
AB9
A
338 350Right-handed alpha
Helix 19
AC1
A
362 366Right-handed 310
Helix 20
AC2
A
368 381Right-handed alpha
Helix 21
AC3
B
52 67Right-handed alpha
Helix 22
AC4
B
68 70Right-handed 310
Helix 23
AC5
B
73 88Right-handed alpha
Helix 24
AC6
B
88 109Right-handed alpha
Helix 25
AC7
B
112 119Right-handed alpha
Helix 26
AC8
B
124 135Right-handed alpha
Helix 27
AC9
B
142 144Right-handed 310
Helix 28
AD1
B
145 168Right-handed alpha
Helix 29
AD2
B
169 171Right-handed 310
Helix 30
AD3
B
176 191Right-handed alpha
Helix 31
AD4
B
212 216Right-handed 310
Helix 32
AD5
B
217 231Right-handed alpha
Helix 33
AD6
B
237 252Right-handed alpha
Helix 34
AD7
B
252 273Right-handed alpha
Helix 35
AD8
B
276 282Right-handed alpha
Helix 36
AD9
B
286 298Right-handed alpha
Helix 37
AE1
B
304 330Right-handed alpha
Helix 38
AE2
B
338 350Right-handed alpha
Helix 39
AE3
B
362 366Right-handed 310
Helix 40
AE4
B
368 381Right-handed alpha
Helix 41
AE5
C
52 67Right-handed alpha
Helix 42
AE6
C
68 70Right-handed 310
Helix 43
AE7
C
73 88Right-handed alpha
Helix 44
AE8
C
88 109Right-handed alpha
Helix 45
AE9
C
112 119Right-handed alpha
Helix 46
AF1
C
124 135Right-handed alpha
Helix 47
AF2
C
142 144Right-handed 310
Helix 48
AF3
C
145 168Right-handed alpha
Helix 49
AF4
C
169 171Right-handed 310
Helix 50
AF5
C
176 191Right-handed alpha
Helix 51
AF6
C
212 216Right-handed 310
Helix 52
AF7
C
217 231Right-handed alpha
Helix 53
AF8
C
237 252Right-handed alpha
Helix 54
AF9
C
252 273Right-handed alpha
Helix 55
AG1
C
276 282Right-handed alpha
Helix 56
AG2
C
286 298Right-handed alpha
Helix 57
AG3
C
304 330Right-handed alpha
Helix 58
AG4
C
338 350Right-handed alpha
Helix 59
AG5
C
362 366Right-handed 310
Helix 60
AG6
C
368 381Right-handed alpha
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There are no sheets in PDB entry 8XDD
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