Analysis of interatomic Contacts of Structural Units in PDB entry:
8XDL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XDL entry

There are 6 chains in PDB entry 8XDL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLU 72
A	GLY 74	PHE 375
B	THR 5	GLU 72
B	GLY 74	PHE 375
C	THR 5	GLU 72
C	GLY 74	HIS 371

There are 66 helices in PDB entry 8XDL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	193	Right-handed alpha
Helix 8	AA8	A	194	197	Right-handed 310
Helix 9	AA9	A	202	217	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	252	257	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	263	268	Right-handed 310
Helix 14	AB5	A	273	285	Right-handed alpha
Helix 15	AB6	A	289	296	Right-handed alpha
Helix 16	AB7	A	301	305	Right-handed 310
Helix 17	AB8	A	308	321	Right-handed alpha
Helix 18	AB9	A	334	336	Right-handed 310
Helix 19	AC1	A	337	347	Right-handed alpha
Helix 20	AC2	A	348	353	Right-handed 310
Helix 21	AC3	A	359	366	Right-handed alpha
Helix 22	AC4	A	367	372	Right-handed 310
Helix 23	AC5	B	55	61	Right-handed alpha
Helix 24	AC6	B	78	92	Right-handed alpha
Helix 25	AC7	B	97	101	Right-handed 310
Helix 26	AC8	B	112	126	Right-handed alpha
Helix 27	AC9	B	137	146	Right-handed alpha
Helix 28	AD1	B	172	175	Right-handed 310
Helix 29	AD2	B	181	193	Right-handed alpha
Helix 30	AD3	B	194	197	Right-handed 310
Helix 31	AD4	B	202	217	Right-handed alpha
Helix 32	AD5	B	222	233	Right-handed alpha
Helix 33	AD6	B	252	257	Right-handed alpha
Helix 34	AD7	B	258	262	Right-handed 310
Helix 35	AD8	B	263	268	Right-handed 310
Helix 36	AD9	B	273	285	Right-handed alpha
Helix 37	AE1	B	289	296	Right-handed alpha
Helix 38	AE2	B	301	305	Right-handed 310
Helix 39	AE3	B	308	321	Right-handed alpha
Helix 40	AE4	B	334	336	Right-handed 310
Helix 41	AE5	B	337	347	Right-handed alpha
Helix 42	AE6	B	348	353	Right-handed 310
Helix 43	AE7	B	359	366	Right-handed alpha
Helix 44	AE8	B	367	372	Right-handed 310
Helix 45	AE9	C	55	61	Right-handed alpha
Helix 46	AF1	C	78	92	Right-handed alpha
Helix 47	AF2	C	97	101	Right-handed 310
Helix 48	AF3	C	112	126	Right-handed alpha
Helix 49	AF4	C	137	146	Right-handed alpha
Helix 50	AF5	C	172	175	Right-handed 310
Helix 51	AF6	C	181	193	Right-handed alpha
Helix 52	AF7	C	194	197	Right-handed 310
Helix 53	AF8	C	202	217	Right-handed alpha
Helix 54	AF9	C	222	233	Right-handed alpha
Helix 55	AG1	C	252	257	Right-handed alpha
Helix 56	AG2	C	258	262	Right-handed 310
Helix 57	AG3	C	263	268	Right-handed 310
Helix 58	AG4	C	273	285	Right-handed alpha
Helix 59	AG5	C	289	296	Right-handed alpha
Helix 60	AG6	C	301	305	Right-handed 310
Helix 61	AG7	C	308	321	Right-handed alpha
Helix 62	AG8	C	334	336	Right-handed 310
Helix 63	AG9	C	337	347	Right-handed alpha
Helix 64	AH1	C	348	353	Right-handed 310
Helix 65	AH2	C	359	366	Right-handed alpha
Helix 66	AH3	C	367	371	Right-handed 310

There are 18 sheets in PDB entry 8XDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	13	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	13	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	13	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XDL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XDL