Analysis of interatomic Contacts of Structural Units in PDB entry:
8XDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XDN entry

There are 10 chains in PDB entry 8XDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 75GLY 361
B
 GLY 75GLY 361
C
 PHE 72GLN 111
D
 PHE 72GLN 111
E
 PHE 41ASP 64
F
 PHE 41ASP 64
G
 SER 5GLY 55
H
 SER 5GLY 55
I
 MET 16ASP 49
J
 MET 16ASP 49
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8XDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 86Right-handed 310
Helix 2
AA2
A
87 92Right-handed alpha
Helix 3
AA3
B
87 92Right-handed alpha
Helix 4
AA4
C
73 96Right-handed alpha
Helix 5
AA5
C
96 109Right-handed alpha
Helix 6
AA6
D
73 109Right-handed alpha
Helix 7
AA7
E
42 60Right-handed alpha
Helix 8
AA8
F
42 61Right-handed alpha
Helix 9
AA9
G
6 39Right-handed alpha
Helix 10
AB1
G
49 53Right-handed 310
Helix 11
AB2
H
6 39Right-handed alpha
Helix 12
AB3
H
48 53Right-handed alpha
Helix 13
AB4
I
17 49Right-handed alpha
Helix 14
AB5
J
17 49Right-handed alpha
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There are 2 sheets in PDB entry 8XDN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 21 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 355first strand
Strand 2
A
337 346anti-parallel
Strand 3
A
358 360anti-parallel
Strand 4
A
101 108parallel
Strand 5
A
113 121anti-parallel
Strand 6
A
128 136anti-parallel
Strand 7
A
149 155anti-parallel
Strand 8
A
160 169anti-parallel
Strand 9
A
172 181anti-parallel
Strand 10
A
184 195anti-parallel
Strand 11
A
199 209anti-parallel
Strand 12
A
214 223anti-parallel
Strand 13
A
232 240anti-parallel
Strand 14
A
243 255anti-parallel
Strand 15
A
259 263anti-parallel
Strand 16
A
269 276anti-parallel
Strand 17
A
282 291anti-parallel
Strand 18
A
298 307anti-parallel
Strand 19
A
312 319anti-parallel
Strand 20
A
323 330anti-parallel
Strand 21
A
337 346anti-parallel
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There are 19 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 108first strand
Strand 2
B
114 121anti-parallel
Strand 3
B
128 136anti-parallel
Strand 4
B
149 155anti-parallel
Strand 5
B
160 167anti-parallel
Strand 6
B
172 181anti-parallel
Strand 7
B
184 195anti-parallel
Strand 8
B
199 209anti-parallel
Strand 9
B
214 226anti-parallel
Strand 10
B
229 240anti-parallel
Strand 11
B
243 255anti-parallel
Strand 12
B
259 263anti-parallel
Strand 13
B
273 276anti-parallel
Strand 14
B
282 287anti-parallel
Strand 15
B
300 307anti-parallel
Strand 16
B
312 319anti-parallel
Strand 17
B
323 329anti-parallel
Strand 18
B
340 346anti-parallel
Strand 19
B
351 355anti-parallel
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