Analysis of interatomic Contacts of Structural Units in PDB entry:
8XDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XDP entry

There are 2 chains in PDB entry 8XDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2TYR 239
B
 GLY -2TYR 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8XDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
18 30Right-handed alpha
Helix 3
AA3
A
31 34Right-handed 310
Helix 4
AA4
A
35 47Right-handed alpha
Helix 5
AA5
A
50 54Right-handed 310
Helix 6
AA6
A
56 70Right-handed alpha
Helix 7
AA7
A
83 93Right-handed alpha
Helix 8
AA8
A
105 119Right-handed alpha
Helix 9
AA9
A
121 123Right-handed 310
Helix 10
AB1
A
131 143Right-handed alpha
Helix 11
AB2
A
144 148Right-handed 310
Helix 12
AB3
A
157 159Right-handed 310
Helix 13
AB4
A
160 171Right-handed alpha
Helix 14
AB5
A
184 191Right-handed 310
Helix 15
AB6
A
198 218Right-handed alpha
Helix 16
AB7
B
4 8Right-handed 310
Helix 17
AB8
B
18 30Right-handed alpha
Helix 18
AB9
B
31 34Right-handed 310
Helix 19
AC1
B
35 46Right-handed alpha
Helix 20
AC2
B
50 54Right-handed 310
Helix 21
AC3
B
56 70Right-handed alpha
Helix 22
AC4
B
83 93Right-handed alpha
Helix 23
AC5
B
105 119Right-handed alpha
Helix 24
AC6
B
121 123Right-handed 310
Helix 25
AC7
B
131 143Right-handed alpha
Helix 26
AC8
B
144 148Right-handed 310
Helix 27
AC9
B
157 159Right-handed 310
Helix 28
AD1
B
160 171Right-handed alpha
Helix 29
AD2
B
184 191Right-handed 310
Helix 30
AD3
B
198 218Right-handed alpha
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There are 2 sheets in PDB entry 8XDP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
98 103parallel
Strand 3
A
74 78parallel
Strand 4
A
149 154parallel
Strand 5
A
172 181parallel
Strand 6
A
232 237anti-parallel
Strand 7
A
221 226anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
98 103parallel
Strand 3
B
74 78parallel
Strand 4
B
149 154parallel
Strand 5
B
172 181parallel
Strand 6
B
232 237anti-parallel
Strand 7
B
221 226anti-parallel
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