Analysis of interatomic Contacts of Structural Units in PDB entry:
8XDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XDX entry

There is 1 chain in PDB entry 8XDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 32SER 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8XDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 42Right-handed 310
Helix 2
AA2
A
57 73Right-handed alpha
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
117 132Right-handed alpha
Helix 5
AA5
A
165 172Right-handed alpha
Helix 6
AA6
A
173 178Right-handed alpha
Helix 7
AA7
A
179 181Right-handed 310
Helix 8
AA8
A
187 189Right-handed 310
Helix 9
AA9
A
222 239Right-handed alpha
Helix 10
AB1
A
249 253Right-handed 310
Helix 11
AB2
A
254 268Right-handed alpha
Helix 12
AB3
A
283 292Right-handed alpha
Helix 13
AB4
A
303 312Right-handed alpha
Helix 14
AB5
A
322 326Right-handed 310
Helix 15
AB6
A
328 330Right-handed 310
Helix 16
AB7
A
356 367Right-handed alpha
Helix 17
AB8
A
376 380Right-handed alpha
Helix 18
AB9
A
384 398Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8XDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
76 78parallel
Strand 3
A
134 139parallel
Strand 4
A
244 247parallel
Strand 5
A
274 277parallel
Strand 6
A
296 299parallel
Strand 7
A
332 335parallel
Strand 8
A
371 375parallel
Strand 9
A
46 48parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
96 98anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
216 218anti-parallel
Strand 3
A
191 194anti-parallel
Strand 4
A
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
157 162anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 405first strand
Strand 2
A
413 418anti-parallel
Strand 3
A
429 434anti-parallel
Strand 4
A
486 491anti-parallel
Strand 5
A
454 457anti-parallel
Strand 6
A
465 467anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 447first strand
Strand 2
A
473 479anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il