Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XFA entry

There is 1 chain in PDB entry 8XFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34GLU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8XFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 71Right-handed alpha
Helix 2
AA2
A
79 85Right-handed alpha
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
102 109Right-handed alpha
Helix 5
AA5
A
122 130Right-handed alpha
Helix 6
AA6
A
143 154Right-handed alpha
Helix 7
AA7
A
155 182Right-handed alpha
Helix 8
AA8
A
207 213Right-handed alpha
Helix 9
AA9
A
220 227Right-handed alpha
Helix 10
AB1
A
236 244Right-handed 310
Helix 11
AB2
A
258 264Right-handed alpha
Helix 12
AB3
A
264 269Right-handed alpha
Helix 13
AB4
A
270 275Right-handed alpha
Helix 14
AB5
A
283 287Right-handed alpha
Helix 15
AB6
A
290 308Right-handed alpha
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There are 2 sheets in PDB entry 8XFA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
132 135anti-parallel
Strand 3
A
113 117parallel
Strand 4
A
57 59parallel
Strand 5
A
75 78parallel
Strand 6
A
96 97parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
196 200anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
247 252parallel
Strand 5
A
278 282parallel
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