Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XFC entry

There are 4 chains in PDB entry 8XFC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLY 308
C	HIS 4	ALA 287
D	ALA 5	PRO 539
A	CYS 25	ASN 242

There are 69 helices in PDB entry 8XFC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	11	Right-handed alpha
Helix 2	AA2	B	12	30	Right-handed alpha
Helix 3	AA3	B	33	38	Right-handed alpha
Helix 4	AA4	B	50	57	Right-handed alpha
Helix 5	AA5	B	61	75	Right-handed alpha
Helix 6	AA6	B	86	122	Right-handed alpha
Helix 7	AA7	B	126	142	Right-handed alpha
Helix 8	AA8	B	143	157	Right-handed alpha
Helix 9	AA9	B	171	202	Right-handed alpha
Helix 10	AB1	B	204	212	Right-handed alpha
Helix 11	AB2	B	216	227	Right-handed alpha
Helix 12	AB3	B	229	245	Right-handed alpha
Helix 13	AB4	B	247	254	Right-handed alpha
Helix 14	AB5	B	259	270	Right-handed alpha
Helix 15	AB6	B	273	302	Right-handed alpha
Helix 16	AB7	C	6	17	Right-handed alpha
Helix 17	AB8	C	18	37	Right-handed alpha
Helix 18	AB9	C	38	41	Right-handed 310
Helix 19	AC1	C	72	110	Right-handed alpha
Helix 20	AC2	C	113	126	Right-handed alpha
Helix 21	AC3	C	128	137	Right-handed alpha
Helix 22	AC4	C	144	172	Right-handed alpha
Helix 23	AC5	C	175	182	Right-handed alpha
Helix 24	AC6	C	186	196	Right-handed alpha
Helix 25	AC7	C	199	225	Right-handed alpha
Helix 26	AC8	C	239	243	Right-handed 310
Helix 27	AC9	C	253	279	Right-handed alpha
Helix 28	AD1	C	280	284	Right-handed 310
Helix 29	AD2	D	48	54	Right-handed alpha
Helix 30	AD3	D	84	88	Right-handed 310
Helix 31	AD4	D	110	116	Right-handed alpha
Helix 32	AD5	D	126	139	Right-handed alpha
Helix 33	AD6	D	142	147	Right-handed alpha
Helix 34	AD7	D	155	168	Right-handed alpha
Helix 35	AD8	D	179	183	Right-handed 310
Helix 36	AD9	D	188	202	Right-handed alpha
Helix 37	AE1	D	213	221	Right-handed alpha
Helix 38	AE2	D	238	244	Right-handed alpha
Helix 39	AE3	D	247	256	Right-handed alpha
Helix 40	AE4	D	330	338	Right-handed alpha
Helix 41	AE5	D	362	368	Right-handed alpha
Helix 42	AE6	D	387	399	Right-handed alpha
Helix 43	AE7	D	405	418	Right-handed alpha
Helix 44	AE8	D	421	425	Right-handed 310
Helix 45	AE9	D	428	432	Right-handed 310
Helix 46	AF1	D	433	446	Right-handed alpha
Helix 47	AF2	D	463	482	Right-handed alpha
Helix 48	AF3	D	516	521	Right-handed alpha
Helix 49	AF4	D	525	533	Right-handed alpha
Helix 50	AF5	A	47	51	Right-handed 310
Helix 51	AF6	A	53	58	Right-handed alpha
Helix 52	AF7	A	109	121	Right-handed alpha
Helix 53	AF8	A	122	126	Right-handed 310
Helix 54	AF9	A	128	134	Right-handed 310
Helix 55	AG1	A	138	144	Right-handed alpha
Helix 56	AG2	A	178	182	Right-handed 310
Helix 57	AG3	A	189	193	Right-handed 310
Helix 58	AG4	A	195	200	Right-handed alpha
Helix 59	AG5	A	252	262	Right-handed alpha
Helix 60	AG6	A	278	284	Right-handed alpha
Helix 61	AG7	A	308	322	Right-handed alpha
Helix 62	AG8	A	324	332	Right-handed alpha
Helix 63	AG9	A	357	361	Right-handed 310
Helix 64	AH1	A	364	376	Right-handed alpha
Helix 65	AH2	A	395	407	Right-handed alpha
Helix 66	AH3	A	421	431	Right-handed alpha
Helix 67	AH4	A	448	454	Right-handed alpha
Helix 68	AH5	A	470	482	Right-handed alpha
Helix 69	AH6	A	485	501	Right-handed alpha

There are 10 sheets in PDB entry 8XFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	63	64	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	211	first strand
Strand 2	D	38	41	parallel
Strand 3	D	223	227	parallel
Strand 4	D	232	237	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	310	first strand
Strand 2	D	285	291	anti-parallel
Strand 3	D	345	347	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	488	489	first strand
Strand 2	D	320	324	parallel
Strand 3	D	501	506	parallel
Strand 4	D	509	515	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	374	first strand
Strand 2	D	452	455	parallel
Strand 3	D	484	485	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	246	249	parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	209	211	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	86	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	164	168	anti-parallel
Strand 4	A	158	161	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	507	517	anti-parallel
Strand 3	A	287	299	anti-parallel
Strand 4	A	438	443	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	390	first strand
Strand 2	A	415	419	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XFC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFC