Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XFD entry

There are 3 chains in PDB entry 8XFD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	ILE 540
B	GLN 24	ILE 540
C	GLN 24	GLN 320

There are100 helices in PDB entry 8XFD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	32	Right-handed alpha
Helix 2	AA2	A	35	42	Right-handed alpha
Helix 3	AA3	A	62	66	Right-handed 310
Helix 4	AA4	A	67	78	Right-handed alpha
Helix 5	AA5	A	90	107	Right-handed alpha
Helix 6	AA6	A	155	159	Right-handed 310
Helix 7	AA7	A	173	178	Right-handed alpha
Helix 8	AA8	A	232	245	Right-handed alpha
Helix 9	AA9	A	257	269	Right-handed alpha
Helix 10	AB1	A	270	273	Right-handed 310
Helix 11	AB2	A	283	289	Right-handed alpha
Helix 12	AB3	A	289	297	Right-handed alpha
Helix 13	AB4	A	304	311	Right-handed alpha
Helix 14	AB5	A	312	314	Right-handed 310
Helix 15	AB6	A	315	331	Right-handed alpha
Helix 16	AB7	A	341	346	Right-handed 310
Helix 17	AB8	A	351	365	Right-handed alpha
Helix 18	AB9	A	372	377	Right-handed alpha
Helix 19	AC1	A	380	398	Right-handed alpha
Helix 20	AC2	A	400	412	Right-handed alpha
Helix 21	AC3	A	417	434	Right-handed alpha
Helix 22	AC4	A	445	453	Right-handed alpha
Helix 23	AC5	A	466	473	Right-handed alpha
Helix 24	AC6	A	474	476	Right-handed 310
Helix 25	AC7	A	491	510	Right-handed alpha
Helix 26	AC8	B	27	32	Right-handed alpha
Helix 27	AC9	B	35	42	Right-handed alpha
Helix 28	AD1	B	62	66	Right-handed 310
Helix 29	AD2	B	67	78	Right-handed alpha
Helix 30	AD3	B	90	107	Right-handed alpha
Helix 31	AD4	B	155	159	Right-handed 310
Helix 32	AD5	B	173	178	Right-handed alpha
Helix 33	AD6	B	232	246	Right-handed alpha
Helix 34	AD7	B	257	269	Right-handed alpha
Helix 35	AD8	B	270	273	Right-handed 310
Helix 36	AD9	B	283	289	Right-handed alpha
Helix 37	AE1	B	289	297	Right-handed alpha
Helix 38	AE2	B	304	311	Right-handed alpha
Helix 39	AE3	B	312	314	Right-handed 310
Helix 40	AE4	B	315	331	Right-handed alpha
Helix 41	AE5	B	341	346	Right-handed 310
Helix 42	AE6	B	351	365	Right-handed alpha
Helix 43	AE7	B	372	377	Right-handed alpha
Helix 44	AE8	B	380	398	Right-handed alpha
Helix 45	AE9	B	400	412	Right-handed alpha
Helix 46	AF1	B	417	434	Right-handed alpha
Helix 47	AF2	B	445	453	Right-handed alpha
Helix 48	AF3	B	466	473	Right-handed alpha
Helix 49	AF4	B	474	476	Right-handed 310
Helix 50	AF5	B	491	510	Right-handed alpha
Helix 51	AF6	C	27	32	Right-handed alpha
Helix 52	AF7	C	35	43	Right-handed alpha
Helix 53	AF8	C	62	66	Right-handed 310
Helix 54	AF9	C	67	78	Right-handed alpha
Helix 55	AG1	C	90	107	Right-handed alpha
Helix 56	AG2	C	155	159	Right-handed 310
Helix 57	AG3	C	171	177	Right-handed 310
Helix 58	AG4	C	232	245	Right-handed alpha
Helix 59	AG5	C	257	269	Right-handed alpha
Helix 60	AG6	C	270	273	Right-handed 310
Helix 61	AG7	C	283	289	Right-handed alpha
Helix 62	AG8	C	289	297	Right-handed alpha
Helix 63	AG9	C	304	311	Right-handed alpha
Helix 64	AH1	C	312	314	Right-handed 310
Helix 65	AH2	C	315	331	Right-handed alpha
Helix 66	AH3	C	341	346	Right-handed 310
Helix 67	AH4	C	351	365	Right-handed alpha
Helix 68	AH5	C	372	377	Right-handed alpha
Helix 69	AH6	C	380	398	Right-handed alpha
Helix 70	AH7	C	400	412	Right-handed alpha
Helix 71	AH8	C	417	434	Right-handed alpha
Helix 72	AH9	C	445	453	Right-handed alpha
Helix 73	AI1	C	466	473	Right-handed alpha
Helix 74	AI2	C	474	476	Right-handed 310
Helix 75	AI3	C	491	510	Right-handed alpha
Helix 76	AI4	D	27	32	Right-handed alpha
Helix 77	AI5	D	35	43	Right-handed alpha
Helix 78	AI6	D	62	66	Right-handed 310
Helix 79	AI7	D	67	78	Right-handed alpha
Helix 80	AI8	D	90	107	Right-handed alpha
Helix 81	AI9	D	155	159	Right-handed 310
Helix 82	AJ1	D	173	178	Right-handed alpha
Helix 83	AJ2	D	232	245	Right-handed alpha
Helix 84	AJ3	D	257	269	Right-handed alpha
Helix 85	AJ4	D	270	273	Right-handed 310
Helix 86	AJ5	D	283	289	Right-handed alpha
Helix 87	AJ6	D	289	297	Right-handed alpha
Helix 88	AJ7	D	304	311	Right-handed alpha
Helix 89	AJ8	D	312	314	Right-handed 310
Helix 90	AJ9	D	315	331	Right-handed alpha
Helix 91	AK1	D	341	346	Right-handed 310
Helix 92	AK2	D	351	365	Right-handed alpha
Helix 93	AK3	D	372	377	Right-handed alpha
Helix 94	AK4	D	380	398	Right-handed alpha
Helix 95	AK5	D	400	412	Right-handed alpha
Helix 96	AK6	D	417	434	Right-handed alpha
Helix 97	AK7	D	445	453	Right-handed alpha
Helix 98	AK8	D	466	473	Right-handed alpha
Helix 99	AK9	D	474	476	Right-handed 310
Helix 100	AL1	D	491	510	Right-handed alpha

There are 14 sheets in PDB entry 8XFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	81	85	parallel
Strand 3	A	119	123	parallel
Strand 4	A	249	252	parallel
Strand 5	A	276	281	parallel
Strand 6	A	299	303	parallel
Strand 7	A	334	337	parallel
Strand 8	A	368	371	parallel
Strand 9	A	56	60	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	211	213	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	149	153	parallel
Strand 3	A	202	209	anti-parallel
Strand 4	A	191	199	anti-parallel
Strand 5	A	183	186	anti-parallel
Strand 6	A	219	220	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	483	first strand
Strand 2	A	459	464	parallel
Strand 3	A	437	441	parallel
Strand 4	A	518	524	parallel
Strand 5	A	532	539	anti-parallel
Strand 6	D	532	539	anti-parallel
Strand 7	D	518	524	anti-parallel
Strand 8	D	437	441	parallel
Strand 9	D	459	464	parallel
Strand 10	D	479	483	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	81	85	parallel
Strand 3	B	119	123	parallel
Strand 4	B	249	252	parallel
Strand 5	B	276	281	parallel
Strand 6	B	299	303	parallel
Strand 7	B	334	337	parallel
Strand 8	B	368	371	parallel
Strand 9	B	56	60	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	211	213	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	149	153	parallel
Strand 3	B	202	209	anti-parallel
Strand 4	B	191	199	anti-parallel
Strand 5	B	183	186	anti-parallel
Strand 6	B	219	220	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	483	first strand
Strand 2	B	459	464	parallel
Strand 3	B	437	441	parallel
Strand 4	B	518	524	parallel
Strand 5	B	532	539	anti-parallel
Strand 6	C	532	539	anti-parallel
Strand 7	C	518	524	anti-parallel
Strand 8	C	437	441	parallel
Strand 9	C	459	464	parallel
Strand 10	C	479	483	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	81	85	parallel
Strand 3	C	119	123	parallel
Strand 4	C	249	252	parallel
Strand 5	C	276	281	parallel
Strand 6	C	299	303	parallel
Strand 7	C	334	337	parallel
Strand 8	C	368	371	parallel
Strand 9	C	56	60	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	218	220	anti-parallel
Strand 3	C	183	186	anti-parallel
Strand 4	C	191	197	anti-parallel
Strand 5	C	203	209	anti-parallel
Strand 6	C	149	153	anti-parallel
Strand 7	C	166	168	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	144	first strand
Strand 2	C	211	213	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	79	85	parallel
Strand 3	D	119	123	parallel
Strand 4	D	249	252	parallel
Strand 5	D	276	281	parallel
Strand 6	D	299	303	parallel
Strand 7	D	334	337	parallel
Strand 8	D	368	371	parallel
Strand 9	D	56	60	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	211	213	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	168	first strand
Strand 2	D	149	153	parallel
Strand 3	D	202	209	anti-parallel
Strand 4	D	191	198	anti-parallel
Strand 5	D	183	186	anti-parallel
Strand 6	D	219	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XFD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFD