Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XFE entry

There are 5 chains in PDB entry 8XFE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 25	ILE 1005
B	LEU 22	ILE 1005
C	LYS 6	ASP 120
D	ASN 25	GLN 297
E	VAL 27	GLU 298

There are146 helices in PDB entry 8XFE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	38	Right-handed alpha
Helix 2	AA2	A	58	71	Right-handed alpha
Helix 3	AA3	A	80	96	Right-handed alpha
Helix 4	AA4	A	96	108	Right-handed alpha
Helix 5	AA5	A	115	123	Right-handed alpha
Helix 6	AA6	A	136	144	Right-handed alpha
Helix 7	AA7	A	155	159	Right-handed 310
Helix 8	AA8	A	192	197	Right-handed alpha
Helix 9	AA9	A	197	211	Right-handed alpha
Helix 10	AB1	A	225	234	Right-handed alpha
Helix 11	AB2	A	254	263	Right-handed alpha
Helix 12	AB3	A	282	298	Right-handed alpha
Helix 13	AB4	A	312	317	Right-handed alpha
Helix 14	AB5	A	318	322	Right-handed 310
Helix 15	AB6	A	329	334	Right-handed alpha
Helix 16	AB7	A	355	366	Right-handed alpha
Helix 17	AB8	A	375	391	Right-handed alpha
Helix 18	AB9	A	411	416	Right-handed alpha
Helix 19	AC1	A	417	426	Right-handed alpha
Helix 20	AC2	A	433	445	Right-handed alpha
Helix 21	AC3	A	447	462	Right-handed alpha
Helix 22	AC4	A	468	496	Right-handed alpha
Helix 23	AC5	A	508	519	Right-handed alpha
Helix 24	AC6	A	524	531	Right-handed 310
Helix 25	AC7	A	532	539	Right-handed alpha
Helix 26	AC8	A	542	547	Right-handed 310
Helix 27	AC9	A	551	557	Right-handed alpha
Helix 28	AD1	A	558	563	Right-handed alpha
Helix 29	AD2	A	564	572	Right-handed alpha
Helix 30	AD3	A	579	598	Right-handed alpha
Helix 31	AD4	A	600	604	Right-handed 310
Helix 32	AD5	A	605	633	Right-handed alpha
Helix 33	AD6	A	648	659	Right-handed alpha
Helix 34	AD7	A	660	670	Right-handed alpha
Helix 35	AD8	A	672	676	Right-handed 310
Helix 36	AD9	A	680	689	Right-handed alpha
Helix 37	AE1	A	691	700	Right-handed alpha
Helix 38	AE2	A	706	722	Right-handed alpha
Helix 39	AE3	A	723	726	Right-handed 310
Helix 40	AE4	A	729	742	Right-handed alpha
Helix 41	AE5	A	750	761	Right-handed alpha
Helix 42	AE6	A	771	776	Right-handed alpha
Helix 43	AE7	A	777	784	Right-handed alpha
Helix 44	AE8	A	800	810	Right-handed alpha
Helix 45	AE9	A	832	839	Right-handed alpha
Helix 46	AF1	A	840	845	Right-handed 310
Helix 47	AF2	A	846	854	Right-handed alpha
Helix 48	AF3	A	855	857	Right-handed 310
Helix 49	AF4	A	861	871	Right-handed alpha
Helix 50	AF5	A	878	902	Right-handed alpha
Helix 51	AF6	A	913	922	Right-handed alpha
Helix 52	AF7	A	930	934	Right-handed 310
Helix 53	AF8	A	937	945	Right-handed alpha
Helix 54	AF9	A	950	954	Right-handed 310
Helix 55	AG1	A	955	961	Right-handed 310
Helix 56	AG2	A	963	971	Right-handed alpha
Helix 57	AG3	A	976	989	Right-handed alpha
Helix 58	AG4	A	993	1003	Right-handed alpha
Helix 59	AG5	B	24	38	Right-handed alpha
Helix 60	AG6	B	47	52	Right-handed alpha
Helix 61	AG7	B	59	64	Right-handed alpha
Helix 62	AG8	B	64	69	Right-handed alpha
Helix 63	AG9	B	81	86	Right-handed alpha
Helix 64	AH1	B	86	94	Right-handed alpha
Helix 65	AH2	B	99	108	Right-handed alpha
Helix 66	AH3	B	115	123	Right-handed alpha
Helix 67	AH4	B	140	145	Right-handed alpha
Helix 68	AH5	B	154	158	Right-handed 310
Helix 69	AH6	B	192	197	Right-handed alpha
Helix 70	AH7	B	199	211	Right-handed alpha
Helix 71	AH8	B	222	230	Right-handed alpha
Helix 72	AH9	B	254	263	Right-handed alpha
Helix 73	AI1	B	272	274	Right-handed 310
Helix 74	AI2	B	281	296	Right-handed alpha
Helix 75	AI3	B	304	317	Right-handed alpha
Helix 76	AI4	B	318	321	Right-handed 310
Helix 77	AI5	B	329	334	Right-handed alpha
Helix 78	AI6	B	357	366	Right-handed alpha
Helix 79	AI7	B	374	379	Right-handed alpha
Helix 80	AI8	B	381	392	Right-handed alpha
Helix 81	AI9	B	411	416	Right-handed alpha
Helix 82	AJ1	B	417	426	Right-handed alpha
Helix 83	AJ2	B	432	445	Right-handed alpha
Helix 84	AJ3	B	447	462	Right-handed alpha
Helix 85	AJ4	B	463	466	Right-handed 310
Helix 86	AJ5	B	468	488	Right-handed alpha
Helix 87	AJ6	B	508	519	Right-handed alpha
Helix 88	AJ7	B	523	527	Right-handed 310
Helix 89	AJ8	B	539	547	Right-handed 310
Helix 90	AJ9	B	551	570	Right-handed alpha
Helix 91	AK1	B	581	596	Right-handed alpha
Helix 92	AK2	B	600	604	Right-handed 310
Helix 93	AK3	B	605	628	Right-handed alpha
Helix 94	AK4	B	648	659	Right-handed alpha
Helix 95	AK5	B	660	671	Right-handed alpha
Helix 96	AK6	B	672	676	Right-handed 310
Helix 97	AK7	B	681	695	Right-handed alpha
Helix 98	AK8	B	705	722	Right-handed alpha
Helix 99	AK9	B	723	725	Right-handed 310
Helix 100	AL1	B	729	742	Right-handed alpha
Helix 101	AL2	B	751	760	Right-handed alpha
Helix 102	AL3	B	768	786	Right-handed alpha
Helix 103	AL4	B	802	812	Right-handed alpha
Helix 104	AL5	B	831	841	Right-handed alpha
Helix 105	AL6	B	842	845	Right-handed 310
Helix 106	AL7	B	846	855	Right-handed alpha
Helix 107	AL8	B	862	871	Right-handed alpha
Helix 108	AL9	B	878	903	Right-handed alpha
Helix 109	AM1	B	912	922	Right-handed alpha
Helix 110	AM2	B	929	934	Right-handed 310
Helix 111	AM3	B	937	945	Right-handed alpha
Helix 112	AM4	B	950	954	Right-handed 310
Helix 113	AM5	B	955	962	Right-handed 310
Helix 114	AM6	B	963	971	Right-handed alpha
Helix 115	AM7	B	973	978	Right-handed alpha
Helix 116	AM8	B	981	990	Right-handed alpha
Helix 117	AM9	B	994	1004	Right-handed alpha
Helix 118	AN1	C	97	102	Right-handed alpha
Helix 119	AN2	D	26	39	Right-handed alpha
Helix 120	AN3	D	48	53	Right-handed alpha
Helix 121	AN4	D	58	69	Right-handed alpha
Helix 122	AN5	D	86	96	Right-handed alpha
Helix 123	AN6	D	100	109	Right-handed alpha
Helix 124	AN7	D	116	121	Right-handed alpha
Helix 125	AN8	D	122	125	Right-handed 310
Helix 126	AN9	D	139	145	Right-handed alpha
Helix 127	AO1	D	154	159	Right-handed 310
Helix 128	AO2	D	187	191	Right-handed 310
Helix 129	AO3	D	192	197	Right-handed alpha
Helix 130	AO4	D	197	211	Right-handed alpha
Helix 131	AO5	D	222	235	Right-handed alpha
Helix 132	AO6	D	254	264	Right-handed alpha
Helix 133	AO7	D	271	275	Right-handed alpha
Helix 134	AO8	D	281	295	Right-handed alpha
Helix 135	AO9	E	28	40	Right-handed alpha
Helix 136	AP1	E	59	71	Right-handed alpha
Helix 137	AP2	E	86	94	Right-handed alpha
Helix 138	AP3	E	96	109	Right-handed alpha
Helix 139	AP4	E	115	123	Right-handed alpha
Helix 140	AP5	E	173	177	Right-handed 310
Helix 141	AP6	E	179	183	Right-handed 310
Helix 142	AP7	E	192	197	Right-handed alpha
Helix 143	AP8	E	197	211	Right-handed alpha
Helix 144	AP9	E	222	233	Right-handed alpha
Helix 145	AQ1	E	254	262	Right-handed alpha
Helix 146	AQ2	E	282	295	Right-handed alpha

There are 9 sheets in PDB entry 8XFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	346	348	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	C	15	17	anti-parallel
Strand 3	C	22	24	anti-parallel
Strand 4	C	112	113	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	32	first strand
Strand 2	C	82	88	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	67	first strand
Strand 2	C	43	48	anti-parallel
Strand 3	C	115	118	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	129	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	216	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	128	131	parallel
Strand 4	E	42	46	parallel
Strand 5	E	212	216	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XFE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFE