Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XFF entry

There are 5 chains in PDB entry 8XFF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	THR 263
A	ASP 23	ILE 1005
B	LEU 22	ILE 1005
D	ASP 23	ASN 299
E	LEU 22	ASN 299

There are147 helices in PDB entry 8XFF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	29	Right-handed alpha
Helix 2	AA2	A	29	39	Right-handed alpha
Helix 3	AA3	A	59	71	Right-handed alpha
Helix 4	AA4	A	82	96	Right-handed alpha
Helix 5	AA5	A	97	109	Right-handed alpha
Helix 6	AA6	A	117	123	Right-handed alpha
Helix 7	AA7	A	139	144	Right-handed alpha
Helix 8	AA8	A	154	158	Right-handed 310
Helix 9	AA9	A	186	192	Right-handed alpha
Helix 10	AB1	A	197	211	Right-handed alpha
Helix 11	AB2	A	227	233	Right-handed alpha
Helix 12	AB3	A	254	265	Right-handed alpha
Helix 13	AB4	A	281	295	Right-handed alpha
Helix 14	AB5	A	308	317	Right-handed alpha
Helix 15	AB6	A	318	321	Right-handed 310
Helix 16	AB7	A	328	332	Right-handed 310
Helix 17	AB8	A	355	366	Right-handed alpha
Helix 18	AB9	A	366	372	Right-handed alpha
Helix 19	AC1	A	378	391	Right-handed alpha
Helix 20	AC2	A	411	416	Right-handed alpha
Helix 21	AC3	A	417	426	Right-handed alpha
Helix 22	AC4	A	431	445	Right-handed alpha
Helix 23	AC5	A	447	462	Right-handed alpha
Helix 24	AC6	A	468	489	Right-handed alpha
Helix 25	AC7	A	508	520	Right-handed alpha
Helix 26	AC8	A	523	527	Right-handed 310
Helix 27	AC9	A	534	539	Right-handed alpha
Helix 28	AD1	A	540	547	Right-handed 310
Helix 29	AD2	A	551	556	Right-handed alpha
Helix 30	AD3	A	557	559	Right-handed 310
Helix 31	AD4	A	560	570	Right-handed alpha
Helix 32	AD5	A	579	598	Right-handed alpha
Helix 33	AD6	A	600	604	Right-handed 310
Helix 34	AD7	A	605	627	Right-handed alpha
Helix 35	AD8	A	634	638	Right-handed 310
Helix 36	AD9	A	649	659	Right-handed alpha
Helix 37	AE1	A	660	671	Right-handed alpha
Helix 38	AE2	A	672	676	Right-handed 310
Helix 39	AE3	A	682	700	Right-handed alpha
Helix 40	AE4	A	707	722	Right-handed alpha
Helix 41	AE5	A	731	742	Right-handed alpha
Helix 42	AE6	A	750	760	Right-handed alpha
Helix 43	AE7	A	761	763	Right-handed 310
Helix 44	AE8	A	768	785	Right-handed alpha
Helix 45	AE9	A	801	812	Right-handed alpha
Helix 46	AF1	A	817	825	Right-handed alpha
Helix 47	AF2	A	832	840	Right-handed alpha
Helix 48	AF3	A	841	845	Right-handed 310
Helix 49	AF4	A	846	857	Right-handed alpha
Helix 50	AF5	A	878	902	Right-handed alpha
Helix 51	AF6	A	912	922	Right-handed alpha
Helix 52	AF7	A	927	931	Right-handed 310
Helix 53	AF8	A	937	945	Right-handed alpha
Helix 54	AF9	A	955	962	Right-handed 310
Helix 55	AG1	A	963	970	Right-handed alpha
Helix 56	AG2	A	973	989	Right-handed alpha
Helix 57	AG3	A	994	1003	Right-handed alpha
Helix 58	AG4	B	25	38	Right-handed alpha
Helix 59	AG5	B	48	53	Right-handed alpha
Helix 60	AG6	B	59	71	Right-handed alpha
Helix 61	AG7	B	82	85	Right-handed 310
Helix 62	AG8	B	86	95	Right-handed alpha
Helix 63	AG9	B	96	109	Right-handed alpha
Helix 64	AH1	B	117	124	Right-handed alpha
Helix 65	AH2	B	136	144	Right-handed alpha
Helix 66	AH3	B	154	158	Right-handed 310
Helix 67	AH4	B	187	192	Right-handed alpha
Helix 68	AH5	B	197	210	Right-handed alpha
Helix 69	AH6	B	222	227	Right-handed alpha
Helix 70	AH7	B	228	233	Right-handed alpha
Helix 71	AH8	B	256	262	Right-handed alpha
Helix 72	AH9	B	281	299	Right-handed alpha
Helix 73	AI1	B	305	317	Right-handed alpha
Helix 74	AI2	B	318	321	Right-handed 310
Helix 75	AI3	B	329	334	Right-handed alpha
Helix 76	AI4	B	355	366	Right-handed alpha
Helix 77	AI5	B	369	373	Right-handed 310
Helix 78	AI6	B	377	391	Right-handed alpha
Helix 79	AI7	B	417	426	Right-handed alpha
Helix 80	AI8	B	431	445	Right-handed alpha
Helix 81	AI9	B	447	460	Right-handed alpha
Helix 82	AJ1	B	468	487	Right-handed alpha
Helix 83	AJ2	B	488	493	Right-handed alpha
Helix 84	AJ3	B	496	501	Right-handed alpha
Helix 85	AJ4	B	508	519	Right-handed alpha
Helix 86	AJ5	B	523	525	Right-handed 310
Helix 87	AJ6	B	526	531	Right-handed alpha
Helix 88	AJ7	B	532	539	Right-handed alpha
Helix 89	AJ8	B	540	547	Right-handed 310
Helix 90	AJ9	B	551	561	Right-handed alpha
Helix 91	AK1	B	562	567	Right-handed alpha
Helix 92	AK2	B	580	598	Right-handed alpha
Helix 93	AK3	B	600	604	Right-handed 310
Helix 94	AK4	B	605	625	Right-handed alpha
Helix 95	AK5	B	632	639	Right-handed alpha
Helix 96	AK6	B	648	659	Right-handed alpha
Helix 97	AK7	B	660	671	Right-handed alpha
Helix 98	AK8	B	672	676	Right-handed 310
Helix 99	AK9	B	680	685	Right-handed alpha
Helix 100	AL1	B	686	700	Right-handed alpha
Helix 101	AL2	B	706	722	Right-handed alpha
Helix 102	AL3	B	729	742	Right-handed alpha
Helix 103	AL4	B	752	760	Right-handed alpha
Helix 104	AL5	B	761	763	Right-handed 310
Helix 105	AL6	B	768	784	Right-handed alpha
Helix 106	AL7	B	801	810	Right-handed alpha
Helix 107	AL8	B	819	825	Right-handed alpha
Helix 108	AL9	B	832	840	Right-handed alpha
Helix 109	AM1	B	841	845	Right-handed 310
Helix 110	AM2	B	846	855	Right-handed alpha
Helix 111	AM3	B	861	868	Right-handed alpha
Helix 112	AM4	B	880	901	Right-handed alpha
Helix 113	AM5	B	912	922	Right-handed alpha
Helix 114	AM6	B	928	934	Right-handed 310
Helix 115	AM7	B	937	945	Right-handed alpha
Helix 116	AM8	B	955	960	Right-handed 310
Helix 117	AM9	B	963	973	Right-handed alpha
Helix 118	AN1	B	975	986	Right-handed alpha
Helix 119	AN2	B	994	1003	Right-handed alpha
Helix 120	AN3	D	24	40	Right-handed alpha
Helix 121	AN4	D	59	69	Right-handed alpha
Helix 122	AN5	D	82	96	Right-handed alpha
Helix 123	AN6	D	97	109	Right-handed alpha
Helix 124	AN7	D	115	123	Right-handed alpha
Helix 125	AN8	D	139	145	Right-handed alpha
Helix 126	AN9	D	173	177	Right-handed 310
Helix 127	AO1	D	187	192	Right-handed alpha
Helix 128	AO2	D	197	211	Right-handed alpha
Helix 129	AO3	D	222	231	Right-handed alpha
Helix 130	AO4	D	254	264	Right-handed alpha
Helix 131	AO5	D	271	275	Right-handed alpha
Helix 132	AO6	D	281	299	Right-handed alpha
Helix 133	AO7	E	25	40	Right-handed alpha
Helix 134	AO8	E	47	54	Right-handed alpha
Helix 135	AO9	E	58	72	Right-handed alpha
Helix 136	AP1	E	86	94	Right-handed alpha
Helix 137	AP2	E	96	109	Right-handed alpha
Helix 138	AP3	E	115	122	Right-handed alpha
Helix 139	AP4	E	123	125	Right-handed 310
Helix 140	AP5	E	138	146	Right-handed alpha
Helix 141	AP6	E	154	158	Right-handed 310
Helix 142	AP7	E	186	192	Right-handed alpha
Helix 143	AP8	E	192	197	Right-handed alpha
Helix 144	AP9	E	197	211	Right-handed alpha
Helix 145	AQ1	E	222	235	Right-handed alpha
Helix 146	AQ2	E	254	265	Right-handed alpha
Helix 147	AQ3	E	281	296	Right-handed alpha

There are 10 sheets in PDB entry 8XFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	204	207	anti-parallel
Strand 3	C	218	220	anti-parallel
Strand 4	C	255	258	anti-parallel
Strand 5	B	904	907	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	246	first strand
Strand 2	C	59	62	anti-parallel
Strand 3	C	36	38	anti-parallel
Strand 4	A	573	574	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	B	704	705	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	346	348	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	647	first strand
Strand 2	B	677	678	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	216	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	129	131	parallel
Strand 4	E	42	46	parallel
Strand 5	E	212	216	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XFF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFF