Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XFI entry

There are 2 chains in PDB entry 8XFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 35SER 308
B
 SER 34SER 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8XFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 71Right-handed alpha
Helix 2
AA2
A
79 85Right-handed alpha
Helix 3
AA3
A
85 90Right-handed alpha
Helix 4
AA4
A
102 109Right-handed alpha
Helix 5
AA5
A
122 128Right-handed alpha
Helix 6
AA6
A
143 153Right-handed alpha
Helix 7
AA7
A
155 182Right-handed alpha
Helix 8
AA8
A
207 213Right-handed alpha
Helix 9
AA9
A
220 227Right-handed alpha
Helix 10
AB1
A
236 244Right-handed 310
Helix 11
AB2
A
255 257Right-handed 310
Helix 12
AB3
A
258 264Right-handed alpha
Helix 13
AB4
A
264 269Right-handed alpha
Helix 14
AB5
A
270 275Right-handed alpha
Helix 15
AB6
A
283 287Right-handed alpha
Helix 16
AB7
A
290 308Right-handed alpha
Helix 17
AB8
B
61 71Right-handed alpha
Helix 18
AB9
B
79 85Right-handed alpha
Helix 19
AC1
B
85 90Right-handed alpha
Helix 20
AC2
B
102 109Right-handed alpha
Helix 21
AC3
B
122 130Right-handed alpha
Helix 22
AC4
B
143 153Right-handed alpha
Helix 23
AC5
B
155 182Right-handed alpha
Helix 24
AC6
B
207 213Right-handed alpha
Helix 25
AC7
B
220 228Right-handed alpha
Helix 26
AC8
B
236 244Right-handed 310
Helix 27
AC9
B
258 264Right-handed alpha
Helix 28
AD1
B
264 270Right-handed alpha
Helix 29
AD2
B
270 275Right-handed alpha
Helix 30
AD3
B
283 287Right-handed alpha
Helix 31
AD4
B
290 307Right-handed alpha
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There are 4 sheets in PDB entry 8XFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
132 135anti-parallel
Strand 3
A
113 117parallel
Strand 4
A
57 59parallel
Strand 5
A
75 78parallel
Strand 6
A
96 97parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
196 200anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
247 252parallel
Strand 5
A
278 282parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
132 135anti-parallel
Strand 3
B
113 117parallel
Strand 4
B
57 59parallel
Strand 5
B
75 78parallel
Strand 6
B
96 97parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 235first strand
Strand 2
B
196 200anti-parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
247 252parallel
Strand 5
B
278 282parallel
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