Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XFP entry

There are 6 chains in PDB entry 8XFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 33THR 820
E
 VAL 21SER 549
C
 LYS 56ILE 240
G
 LYS 41CYS 141
H
 LYS 56HIS 207
J
 LYS 41CYS 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8XFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 174Right-handed alpha
Helix 2
AA2
A
242 247Right-handed 310
Helix 3
AA3
A
335 339Right-handed 310
Helix 4
AA4
A
468 472Right-handed 310
Helix 5
AA5
A
538 567Right-handed alpha
Helix 6
AA6
A
571 601Right-handed alpha
Helix 7
AA7
A
604 615Right-handed alpha
Helix 8
AA8
A
615 649Right-handed alpha
Helix 9
AA9
A
658 683Right-handed alpha
Helix 10
AB1
A
686 690Right-handed 310
Helix 11
AB2
A
694 699Right-handed alpha
Helix 12
AB3
A
703 732Right-handed alpha
Helix 13
AB4
A
743 769Right-handed alpha
Helix 14
AB5
A
778 790Right-handed alpha
Helix 15
AB6
A
791 804Right-handed alpha
Helix 16
AB7
A
805 820Right-handed alpha
Helix 17
AB8
E
511 515Right-handed 310
Helix 18
AB9
C
102 106Right-handed 310
Helix 19
AC1
C
138 149Right-handed alpha
Helix 20
AC2
C
162 171Right-handed alpha
Helix 21
AC3
C
172 174Right-handed 310
Helix 22
AC4
C
185 198Right-handed alpha
Helix 23
AC5
C
213 220Right-handed alpha
Helix 24
AC6
C
221 227Right-handed alpha
Helix 25
AC7
C
227 239Right-handed alpha
Helix 26
AC8
H
102 106Right-handed 310
Helix 27
AC9
H
128 132Right-handed 310
Helix 28
AD1
H
138 149Right-handed alpha
Helix 29
AD2
H
162 171Right-handed alpha
Helix 30
AD3
H
172 174Right-handed 310
Helix 31
AD4
H
185 198Right-handed alpha
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There are 16 sheets in PDB entry 8XFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
61 63parallel
Strand 3
A
85 87parallel
Strand 4
A
109 111parallel
Strand 5
A
133 135parallel
Strand 6
A
157 159parallel
Strand 7
A
181 183parallel
Strand 8
A
205 207parallel
Strand 9
A
229 231parallel
Strand 10
A
252 254parallel
Strand 11
A
276 278parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
215 216parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
323 326parallel
Strand 3
A
347 349parallel
Strand 4
A
369 371parallel
Strand 5
A
393 395parallel
Strand 6
A
417 419parallel
Strand 7
A
438 440parallel
Strand 8
A
461 463parallel
Strand 9
A
521 522parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
403 404parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 26first strand
Strand 2
E
444 448anti-parallel
Strand 3
E
502 507anti-parallel
Strand 4
E
492 497anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
482 484first strand
Strand 2
E
470 476anti-parallel
Strand 3
E
457 464anti-parallel
Strand 4
E
516 523anti-parallel
Strand 5
E
539 540anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
482 484first strand
Strand 2
E
470 476anti-parallel
Strand 3
E
457 464anti-parallel
Strand 4
E
516 523anti-parallel
Strand 5
E
544 546anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 66first strand
Strand 2
C
76 85anti-parallel
Strand 3
C
180 183anti-parallel
Strand 4
C
151 157parallel
Strand 5
C
120 125parallel
Strand 6
C
94 100parallel
Strand 7
C
202 206anti-parallel
Strand 8
C
58 66anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
60 66first strand
Strand 2
G
69 75anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
82 85first strand
Strand 2
G
92 95anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
101 103first strand
Strand 2
G
112 113anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
118 119first strand
Strand 2
G
124 125anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 66first strand
Strand 2
H
76 85anti-parallel
Strand 3
H
180 183anti-parallel
Strand 4
H
154 157parallel
Strand 5
H
121 125parallel
Strand 6
H
94 101parallel
Strand 7
H
202 206anti-parallel
Strand 8
H
58 66anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
69 75first strand
Strand 2
J
60 66anti-parallel
Strand 3
J
91 95parallel
Strand 4
J
82 85anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
101 106first strand
Strand 2
J
109 113anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
118 119first strand
Strand 2
J
124 125anti-parallel
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