Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XFS entry

There are 6 chains in PDB entry 8XFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 31LYS 821
C
 LYS 56ILE 240
F
 SER 442THR 547
B
 LYS 41CYS 141
E
 LYS 56ARG 245
D
 LYS 41CYS 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8XFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 126Right-handed alpha
Helix 2
AA2
A
169 174Right-handed alpha
Helix 3
AA3
A
242 247Right-handed 310
Helix 4
AA4
A
381 386Right-handed 310
Helix 5
AA5
A
466 472Right-handed alpha
Helix 6
AA6
A
538 565Right-handed alpha
Helix 7
AA7
A
571 601Right-handed alpha
Helix 8
AA8
A
604 613Right-handed alpha
Helix 9
AA9
A
615 649Right-handed alpha
Helix 10
AB1
A
658 683Right-handed alpha
Helix 11
AB2
A
706 732Right-handed alpha
Helix 12
AB3
A
742 768Right-handed alpha
Helix 13
AB4
A
778 790Right-handed alpha
Helix 14
AB5
A
791 805Right-handed alpha
Helix 15
AB6
A
805 821Right-handed alpha
Helix 16
AB7
C
128 132Right-handed 310
Helix 17
AB8
C
138 150Right-handed alpha
Helix 18
AB9
C
161 171Right-handed alpha
Helix 19
AC1
C
184 198Right-handed alpha
Helix 20
AC2
C
217 240Right-handed alpha
Helix 21
AC3
F
486 489Right-handed 310
Helix 22
AC4
F
511 515Right-handed 310
Helix 23
AC5
F
533 537Right-handed 310
Helix 24
AC6
E
102 106Right-handed 310
Helix 25
AC7
E
128 132Right-handed 310
Helix 26
AC8
E
138 150Right-handed alpha
Helix 27
AC9
E
161 171Right-handed alpha
Helix 28
AD1
E
185 198Right-handed alpha
Helix 29
AD2
E
217 245Right-handed alpha
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There are 15 sheets in PDB entry 8XFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
61 63parallel
Strand 3
A
85 87parallel
Strand 4
A
109 111parallel
Strand 5
A
133 135parallel
Strand 6
A
158 159parallel
Strand 7
A
181 183parallel
Strand 8
A
205 207parallel
Strand 9
A
229 231parallel
Strand 10
A
252 255parallel
Strand 11
A
276 279parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
95 96parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
215 216parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
323 326parallel
Strand 3
A
347 350parallel
Strand 4
A
369 372parallel
Strand 5
A
393 396parallel
Strand 6
A
417 420parallel
Strand 7
A
438 440parallel
Strand 8
A
461 463parallel
Strand 9
A
521 522parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 82first strand
Strand 2
C
60 68anti-parallel
Strand 3
C
202 206anti-parallel
Strand 4
C
94 101anti-parallel
Strand 5
C
120 125parallel
Strand 6
C
151 157parallel
Strand 7
C
180 183parallel
Strand 8
C
84 85anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
443 448first strand
Strand 2
F
502 507anti-parallel
Strand 3
F
493 497anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
483 484first strand
Strand 2
F
470 475anti-parallel
Strand 3
F
457 464anti-parallel
Strand 4
F
516 523anti-parallel
Strand 5
F
539 540anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
483 484first strand
Strand 2
F
470 475anti-parallel
Strand 3
F
457 464anti-parallel
Strand 4
F
516 523anti-parallel
Strand 5
F
544 546anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 66first strand
Strand 2
B
69 75anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
92 95anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 106first strand
Strand 2
B
109 113anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
124 125anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 69first strand
Strand 2
E
73 85anti-parallel
Strand 3
E
180 183anti-parallel
Strand 4
E
151 157parallel
Strand 5
E
120 125parallel
Strand 6
E
94 100parallel
Strand 7
E
203 206anti-parallel
Strand 8
E
58 69anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 66first strand
Strand 2
D
69 75anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 86first strand
Strand 2
D
91 95anti-parallel
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