Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XFX entry

There are 2 chains in PDB entry 8XFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 9	TYR 538
B	LYS 9	PHE 539

There are 22 helices in PDB entry 8XFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	68	Right-handed 310
Helix 2	AA2	A	95	113	Right-handed alpha
Helix 3	AA3	A	114	118	Right-handed 310
Helix 4	AA4	A	135	151	Right-handed alpha
Helix 5	AA5	A	176	183	Right-handed alpha
Helix 6	AA6	A	208	236	Right-handed alpha
Helix 7	AA7	A	381	399	Right-handed alpha
Helix 8	AA8	A	430	445	Right-handed alpha
Helix 9	AA9	A	449	453	Right-handed 310
Helix 10	AB1	A	483	490	Right-handed alpha
Helix 11	AB2	A	516	538	Right-handed alpha
Helix 12	AB3	B	95	113	Right-handed alpha
Helix 13	AB4	B	114	118	Right-handed 310
Helix 14	AB5	B	135	151	Right-handed alpha
Helix 15	AB6	B	176	183	Right-handed alpha
Helix 16	AB7	B	211	234	Right-handed alpha
Helix 17	AB8	B	370	373	Right-handed 310
Helix 18	AB9	B	382	399	Right-handed alpha
Helix 19	AC1	B	403	406	Right-handed 310
Helix 20	AC2	B	430	445	Right-handed alpha
Helix 21	AC3	B	483	490	Right-handed alpha
Helix 22	AC4	B	516	539	Right-handed alpha

There are 10 sheets in PDB entry 8XFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	41	47	anti-parallel
Strand 3	A	50	61	anti-parallel
Strand 4	A	121	131	anti-parallel
Strand 5	A	74	81	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	173	first strand
Strand 2	A	160	167	anti-parallel
Strand 3	A	185	191	anti-parallel
Strand 4	A	198	207	anti-parallel
Strand 5	A	504	510	anti-parallel
Strand 6	A	493	498	anti-parallel
Strand 7	A	467	474	anti-parallel
Strand 8	A	477	480	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	330	336	anti-parallel
Strand 3	A	339	350	anti-parallel
Strand 4	A	414	426	anti-parallel
Strand 5	A	361	368	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	330	336	anti-parallel
Strand 3	A	339	350	anti-parallel
Strand 4	A	414	426	anti-parallel
Strand 5	A	408	410	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	16	17	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	41	47	anti-parallel
Strand 3	B	50	61	anti-parallel
Strand 4	B	121	131	anti-parallel
Strand 5	B	74	81	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	173	first strand
Strand 2	B	160	167	anti-parallel
Strand 3	B	185	191	anti-parallel
Strand 4	B	198	207	anti-parallel
Strand 5	B	504	510	anti-parallel
Strand 6	B	493	498	anti-parallel
Strand 7	B	467	474	anti-parallel
Strand 8	B	477	480	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	B	330	336	anti-parallel
Strand 3	B	339	350	anti-parallel
Strand 4	B	414	426	anti-parallel
Strand 5	B	361	368	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	B	330	336	anti-parallel
Strand 3	B	339	350	anti-parallel
Strand 4	B	414	426	anti-parallel
Strand 5	B	408	410	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	448	first strand
Strand 2	B	458	459	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XFX