Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XGM entry

There are 6 chains in PDB entry 8XGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
S	ASP 1	LEU 247
A	ASN 14	VAL 319
B	GLU 3	ASN 340
C	MET 1	PHE 354
G	SER 8	ARG 62
D	GLU 1	SER 137

There are 30 helices in PDB entry 8XGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	S	87	91	Right-handed 310
Helix 2	AA2	A	35	65	Right-handed alpha
Helix 3	AA3	A	70	89	Right-handed alpha
Helix 4	AA4	A	89	99	Right-handed alpha
Helix 5	AA5	A	106	141	Right-handed alpha
Helix 6	AA6	A	141	147	Right-handed alpha
Helix 7	AA7	A	150	170	Right-handed alpha
Helix 8	AA8	A	171	175	Right-handed alpha
Helix 9	AA9	A	198	215	Right-handed alpha
Helix 10	AB1	A	215	237	Right-handed alpha
Helix 11	AB2	A	248	269	Right-handed alpha
Helix 12	AB3	A	270	273	Right-handed 310
Helix 13	AB4	A	279	284	Right-handed alpha
Helix 14	AB5	A	285	305	Right-handed alpha
Helix 15	AB6	A	308	318	Right-handed alpha
Helix 16	AB7	B	4	25	Right-handed alpha
Helix 17	AB8	B	29	33	Right-handed 310
Helix 18	AB9	B	280	282	Right-handed 310
Helix 19	AC1	C	6	30	Right-handed alpha
Helix 20	AC2	C	45	53	Right-handed alpha
Helix 21	AC3	C	241	254	Right-handed alpha
Helix 22	AC4	C	270	279	Right-handed alpha
Helix 23	AC5	C	299	309	Right-handed alpha
Helix 24	AC6	C	329	351	Right-handed alpha
Helix 25	AC7	G	9	23	Right-handed alpha
Helix 26	AC8	G	29	44	Right-handed alpha
Helix 27	AC9	G	45	48	Right-handed 310
Helix 28	AD1	D	4	19	Right-handed alpha
Helix 29	AD2	D	86	88	Right-handed 310
Helix 30	AD3	D	105	120	Right-handed alpha

There are 15 sheets in PDB entry 8XGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	7	first strand
Strand 2	S	17	24	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	110	111	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	140	141	first strand
Strand 2	S	155	161	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	208	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	243	246	parallel
Strand 3	S	225	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	186	190	anti-parallel
Strand 6	S	194	195	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	D	90	96	anti-parallel
Strand 3	D	75	84	anti-parallel
Strand 4	D	43	54	anti-parallel
Strand 5	D	27	40	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	185	189	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	334	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	135	140	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	194	201	anti-parallel
Strand 3	C	34	40	parallel
Strand 4	C	220	226	parallel
Strand 5	C	263	269	parallel
Strand 6	C	322	323	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGM