Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XGO entry

There are 10 chains in PDB entry 8XGO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 39	VAL 337
B	ARG 8	ASN 340
C	ILE 9	PHE 62
D	ASP 18	LEU 264
E	THR 4	VAL 353
F	TYR 2	TYR 2
F	ASN 4	ASN 4
F	PHE 6	PHE 6
F	LEU 8	LEU 8
F	TRP 10	TRP 10

There are 28 helices in PDB entry 8XGO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	45	Right-handed alpha
Helix 2	AA2	A	45	70	Right-handed alpha
Helix 3	AA3	A	71	74	Right-handed 310
Helix 4	AA4	A	75	102	Right-handed alpha
Helix 5	AA5	A	111	146	Right-handed alpha
Helix 6	AA6	A	148	153	Right-handed alpha
Helix 7	AA7	A	155	175	Right-handed alpha
Helix 8	AA8	A	176	179	Right-handed 310
Helix 9	AA9	A	197	213	Right-handed alpha
Helix 10	AB1	A	213	236	Right-handed alpha
Helix 11	AB2	A	245	288	Right-handed alpha
Helix 12	AB3	A	298	324	Right-handed alpha
Helix 13	AB4	A	327	336	Right-handed alpha
Helix 14	AB5	B	9	25	Right-handed alpha
Helix 15	AB6	B	29	34	Right-handed alpha
Helix 16	AB7	C	10	24	Right-handed alpha
Helix 17	AB8	C	29	44	Right-handed alpha
Helix 18	AB9	D	45	49	Right-handed 310
Helix 19	AC1	E	6	31	Right-handed alpha
Helix 20	AC2	E	45	57	Right-handed alpha
Helix 21	AC3	E	206	215	Right-handed 310
Helix 22	AC4	E	227	229	Right-handed 310
Helix 23	AC5	E	240	247	Right-handed alpha
Helix 24	AC6	E	248	254	Right-handed alpha
Helix 25	AC7	E	269	277	Right-handed alpha
Helix 26	AC8	E	281	286	Right-handed alpha
Helix 27	AC9	E	297	309	Right-handed alpha
Helix 28	AD1	E	329	350	Right-handed alpha

There are 14 sheets in PDB entry 8XGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	190	193	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	169	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	252	254	anti-parallel
Strand 4	B	259	262	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	296	298	anti-parallel
Strand 4	B	304	306	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	35	42	anti-parallel
Strand 3	D	95	100	anti-parallel
Strand 4	D	85	90	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	66	68	anti-parallel
Strand 3	D	50	52	anti-parallel
Strand 4	D	114	116	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	55	56	anti-parallel
Strand 3	D	109	111	anti-parallel
Strand 4	D	132	134	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	172	178	anti-parallel
Strand 3	D	228	233	anti-parallel
Strand 4	D	220	224	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	212	first strand
Strand 2	D	202	207	anti-parallel
Strand 3	D	191	196	anti-parallel
Strand 4	D	242	248	anti-parallel
Strand 5	D	260	262	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	189	first strand
Strand 2	E	194	199	anti-parallel
Strand 3	E	35	39	parallel
Strand 4	E	219	225	parallel
Strand 5	E	262	268	parallel
Strand 6	E	318	322	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XGO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGO